| Definition | Burkholderia pseudomallei 1710b chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_007435 |
| Length | 3,181,762 |
Click here to switch to the map view.
The map label for this gene is polX [H]
Identifier: 76817244
GI number: 76817244
Start: 2438580
End: 2440532
Strand: Direct
Name: polX [H]
Synonym: BURPS1710b_A2005
Alternate gene names: 76817244
Gene position: 2438580-2440532 (Clockwise)
Preceding gene: 76818305
Following gene: 76819686
Centisome position: 76.64
GC content: 70.61
Gene sequence:
>1953_bases ATGCCGATCCACAATGCCGATTTCGCGGCGGTCTTCGCGGAGATCGCCGACTTGCTCGAGATACAGGGGGCCAATCCGTT TCGCGTGCGTGCGTACCGCAACGCGGCGCGCACCATCGGCGGGCTCGGCCGCGACATCGGCGCGCTGATCGCGGCCGGCC GCAGCCTCGACGATATCCCGACGATCGGCGCCGACCTCGCCGGCAAGCTGCGCGAGATCGCGACGACGGGCACCTGCGCG TTGCAGCGGCAACTGCGCGGGGCGCTGCCGGCGGCGATCGTCGAGTTGCTCGGCGTGCCGGGGCTCGGCGCGAAACGCGT GCGCGCGCTGCACGACGCGCTCGGCGTCGAGACGCTCGAGCAACTGAAGACGGCGGCTGAGCACGGCAAGATCCGCGGGC TGCCCGGCTTCGGCGAGAAAACCGAGGCGCACATCGCGGAGGCGATCGGCGCGCGGCTGCGGCGCAAGTCGCAGCGGTTC CTGCTGTCGTTCGCGACGCAGTACCTGACGCCGCTGCTCACGTATCTGCGCGAAACGCCGGGCGTGTCCGAGGCGGTGGC GGCGGGCAGCTTCCGCCGGCGGCGCGAGAGCGTCGGCGATCTCGACATCGTCGTTACGTCGGGCGATCCGGCGAAGGTCT CGGCGCGCTTCGTCGAGTACGGCGAAGTCGCGCGCGTGCTCGCGAGCGGCGATACGCGCTCGAGCGTCGTGCTTCGCTGC GGCATTCAGGCCGATCTGCGCGTGGTGTCGCCGGCGGCGCTCGGCGCGGCGCTCGTCTATTTCACCGGCTCGAAGGCGCA TAACATCGCGATGCGGCGCATCGCGCAGGCGCGCGATCTGAAGATCAACGAATACGGCGTGTTCGACGGCGAGCGGCGCA TCGCCGGCGCAACCGAGGAATCGGTCTACGCGTCGATCGGCCTCGCATGGGTGCCGCCCGAGCTGCGCGAGAACCGGGGC GAGATCGAAGCCGCGCGCGAGGGCCGGCTGCCGGCCCTCGTCGAGCGCAAGCATCTGCGCGGCGACCTGCATGCGCACAC GAACGCGACCGACGGGCGCGACAGCCTGCGGGACATGGCGCTCGAGGCGCGCAAGCGCGGCCTCGATTATCTGGCGATCA CCGATCATGCGTGCGGGCCCGGCGTCGCGCACGGCCTCGACGCGGAGCGTCTCGCCAGACAAATCGACGAGATCGACCGC TTGAACGAGACACTCGACGGCATCGTGCTCCTGAAGGGGATCGAGGTCGACATTCTGGAGGACGGCAGCCTCGATCTGCC CGACGGCGTGCTCGCGCGGCTCGATCTCGTGGTCGGCGCGGTTCACGGCCATTTCGATTTGTCGCGCGCCGCGCAGACCG AGCGCGTGCTGCGCGCGATGGACCATCCGTATTTCTCGATCCTCGCGCATCCGTCGGGGCGGCTGCTCGGCGAGCGCGAC GCGTGCGACATCGATCTCGCCCGCGTGATCGAGCACGCTCGCGCTCGCGGCTGCCATCTGGAGCTGAACGCGCAGCCGCA GCGGCTGGACCTCGCCGATGTCTGGTGCCGGCATGCGGCCGAGGCGGGCGTGCTCGTGTCGATCGATTCGGACGCGCATC GGCGCGAGGATCTGGGCCATCTCGGGATCGGCGTCGATCAGGCGCGGCGCGGCTGGCTGACGAAGGCGCAGGTGCTCAAC ACGCGCACGCTCGCGCAGTTGCGGCCGCTGCTCGCGCGGACGATGGGCGGCGGCGCGATGTCGGTGTCGGCGTCCGAGCC GGCGCCTGTTCCGGCGCCCGTGTCTGCGTCGAAATCGGCATCGGCATCGACATCGACATCGACATCGACATCGACATCGA CATCGGCATCGACGGGCGCTTCGCGAAAGCGTTCGTCCGGCAAGCGCGACACGGCGGGCAGCGCCGAAGGCGGCGCCCGT CGCACGAAGAAGACGCGGCGCCCGCCCGCGTGA
Upstream 100 bases:
>100_bases CGAGATAAAGCGAAAGCGCGCGCGAGGCCCGCGCGCGGCGCACCGAGCCGTTGCGGGCCGTCGAGCCGCGCCGTGCGCGC CAAGTGACGCGAGGTCGATC
Downstream 100 bases:
>100_bases ATGCGAAGCGGCGGCGCCGGCGGTTGCGAGCGTCGATGCGCGCCTGCGGCCGGGCTCGTCCGTGCATCGATGCGGCACCG TCACGTTCGGCGCGCTTTCC
Product: DNA polymerase X family/PHP domain-containing protein
Products: NA
Alternate protein names: DNA polymerase type-X; 3'-5' exodeoxyribonuclease; 3'-5' exonuclease [H]
Number of amino acids: Translated: 650; Mature: 649
Protein sequence:
>650_residues MPIHNADFAAVFAEIADLLEIQGANPFRVRAYRNAARTIGGLGRDIGALIAAGRSLDDIPTIGADLAGKLREIATTGTCA LQRQLRGALPAAIVELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGLPGFGEKTEAHIAEAIGARLRRKSQRF LLSFATQYLTPLLTYLRETPGVSEAVAAGSFRRRRESVGDLDIVVTSGDPAKVSARFVEYGEVARVLASGDTRSSVVLRC GIQADLRVVSPAALGAALVYFTGSKAHNIAMRRIAQARDLKINEYGVFDGERRIAGATEESVYASIGLAWVPPELRENRG EIEAAREGRLPALVERKHLRGDLHAHTNATDGRDSLRDMALEARKRGLDYLAITDHACGPGVAHGLDAERLARQIDEIDR LNETLDGIVLLKGIEVDILEDGSLDLPDGVLARLDLVVGAVHGHFDLSRAAQTERVLRAMDHPYFSILAHPSGRLLGERD ACDIDLARVIEHARARGCHLELNAQPQRLDLADVWCRHAAEAGVLVSIDSDAHRREDLGHLGIGVDQARRGWLTKAQVLN TRTLAQLRPLLARTMGGGAMSVSASEPAPVPAPVSASKSASASTSTSTSTSTSTSASTGASRKRSSGKRDTAGSAEGGAR RTKKTRRPPA
Sequences:
>Translated_650_residues MPIHNADFAAVFAEIADLLEIQGANPFRVRAYRNAARTIGGLGRDIGALIAAGRSLDDIPTIGADLAGKLREIATTGTCA LQRQLRGALPAAIVELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGLPGFGEKTEAHIAEAIGARLRRKSQRF LLSFATQYLTPLLTYLRETPGVSEAVAAGSFRRRRESVGDLDIVVTSGDPAKVSARFVEYGEVARVLASGDTRSSVVLRC GIQADLRVVSPAALGAALVYFTGSKAHNIAMRRIAQARDLKINEYGVFDGERRIAGATEESVYASIGLAWVPPELRENRG EIEAAREGRLPALVERKHLRGDLHAHTNATDGRDSLRDMALEARKRGLDYLAITDHACGPGVAHGLDAERLARQIDEIDR LNETLDGIVLLKGIEVDILEDGSLDLPDGVLARLDLVVGAVHGHFDLSRAAQTERVLRAMDHPYFSILAHPSGRLLGERD ACDIDLARVIEHARARGCHLELNAQPQRLDLADVWCRHAAEAGVLVSIDSDAHRREDLGHLGIGVDQARRGWLTKAQVLN TRTLAQLRPLLARTMGGGAMSVSASEPAPVPAPVSASKSASASTSTSTSTSTSTSASTGASRKRSSGKRDTAGSAEGGAR RTKKTRRPPA >Mature_649_residues PIHNADFAAVFAEIADLLEIQGANPFRVRAYRNAARTIGGLGRDIGALIAAGRSLDDIPTIGADLAGKLREIATTGTCAL QRQLRGALPAAIVELLGVPGLGAKRVRALHDALGVETLEQLKTAAEHGKIRGLPGFGEKTEAHIAEAIGARLRRKSQRFL LSFATQYLTPLLTYLRETPGVSEAVAAGSFRRRRESVGDLDIVVTSGDPAKVSARFVEYGEVARVLASGDTRSSVVLRCG IQADLRVVSPAALGAALVYFTGSKAHNIAMRRIAQARDLKINEYGVFDGERRIAGATEESVYASIGLAWVPPELRENRGE IEAAREGRLPALVERKHLRGDLHAHTNATDGRDSLRDMALEARKRGLDYLAITDHACGPGVAHGLDAERLARQIDEIDRL NETLDGIVLLKGIEVDILEDGSLDLPDGVLARLDLVVGAVHGHFDLSRAAQTERVLRAMDHPYFSILAHPSGRLLGERDA CDIDLARVIEHARARGCHLELNAQPQRLDLADVWCRHAAEAGVLVSIDSDAHRREDLGHLGIGVDQARRGWLTKAQVLNT RTLAQLRPLLARTMGGGAMSVSASEPAPVPAPVSASKSASASTSTSTSTSTSTSASTGASRKRSSGKRDTAGSAEGGARR TKKTRRPPA
Specific function: Strictly DNA-template-directed DNA polymerase, preferentially acting on DNA structures containing gaps from one to a few nucleotides and bearing a phosphate group at the 5' end of the downstream DNA. The fact that PolX is able to conduct filling of a sing
COG id: COG1796
COG function: function code L; DNA polymerase IV (family X)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the PHP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002054 - InterPro: IPR010996 - InterPro: IPR003583 - InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 - InterPro: IPR022311 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 69427; Mature: 69295
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIHNADFAAVFAEIADLLEIQGANPFRVRAYRNAARTIGGLGRDIGALIAAGRSLDDIP CCCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TIGADLAGKLREIATTGTCALQRQLRGALPAAIVELLGVPGLGAKRVRALHDALGVETLE CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH QLKTAAEHGKIRGLPGFGEKTEAHIAEAIGARLRRKSQRFLLSFATQYLTPLLTYLRETP HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GVSEAVAAGSFRRRRESVGDLDIVVTSGDPAKVSARFVEYGEVARVLASGDTRSSVVLRC CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE GIQADLRVVSPAALGAALVYFTGSKAHNIAMRRIAQARDLKINEYGVFDGERRIAGATEE CCCCCCEEECHHHHHEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH SVYASIGLAWVPPELRENRGEIEAAREGRLPALVERKHLRGDLHAHTNATDGRDSLRDMA HHHHHCCEEECCHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCHHCCCCCCCCHHHHHHHH LEARKRGLDYLAITDHACGPGVAHGLDAERLARQIDEIDRLNETLDGIVLLKGIEVDILE HHHHHCCCCEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC DGSLDLPDGVLARLDLVVGAVHGHFDLSRAAQTERVLRAMDHPYFSILAHPSGRLLGERD CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC ACDIDLARVIEHARARGCHLELNAQPQRLDLADVWCRHAAEAGVLVSIDSDAHRREDLGH CCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHCCC LGIGVDQARRGWLTKAQVLNTRTLAQLRPLLARTMGGGAMSVSASEPAPVPAPVSASKSA CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC SASTSTSTSTSTSTSASTGASRKRSSGKRDTAGSAEGGARRTKKTRRPPA CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCC >Mature Secondary Structure PIHNADFAAVFAEIADLLEIQGANPFRVRAYRNAARTIGGLGRDIGALIAAGRSLDDIP CCCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TIGADLAGKLREIATTGTCALQRQLRGALPAAIVELLGVPGLGAKRVRALHDALGVETLE CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH QLKTAAEHGKIRGLPGFGEKTEAHIAEAIGARLRRKSQRFLLSFATQYLTPLLTYLRETP HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GVSEAVAAGSFRRRRESVGDLDIVVTSGDPAKVSARFVEYGEVARVLASGDTRSSVVLRC CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE GIQADLRVVSPAALGAALVYFTGSKAHNIAMRRIAQARDLKINEYGVFDGERRIAGATEE CCCCCCEEECHHHHHEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH SVYASIGLAWVPPELRENRGEIEAAREGRLPALVERKHLRGDLHAHTNATDGRDSLRDMA HHHHHCCEEECCHHHHCCCCCCHHHHCCCCHHHHHHHHHCCCHHCCCCCCCCHHHHHHHH LEARKRGLDYLAITDHACGPGVAHGLDAERLARQIDEIDRLNETLDGIVLLKGIEVDILE HHHHHCCCCEEEEECCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEEEC DGSLDLPDGVLARLDLVVGAVHGHFDLSRAAQTERVLRAMDHPYFSILAHPSGRLLGERD CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC ACDIDLARVIEHARARGCHLELNAQPQRLDLADVWCRHAAEAGVLVSIDSDAHRREDLGH CCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHCCC LGIGVDQARRGWLTKAQVLNTRTLAQLRPLLARTMGGGAMSVSASEPAPVPAPVSASKSA CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC SASTSTSTSTSTSTSASTGASRKRSSGKRDTAGSAEGGARRTKKTRRPPA CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]