Click here to switch to the map view.

The map label for this gene is 75910070

Identifier: 75910070

GI number: 75910070

Start: 4815181

End: 4815480

Strand: Direct

Name: 75910070

Synonym: Ava_3866

Alternate gene names: NA

Gene position: 4815181-4815480 (Clockwise)

Preceding gene: 75910068

Following gene: 75910072

Centisome position: 75.64

GC content: 42.67

Gene sequence:

>300_bases
TTGTCCAAGTTTATTTTAAAAATTCTTTGGCTAGACGAGAACGTAGCTCTGGCTGTTGATCAGGTGGTAGGCAAAGGTAC
TAGTCCTCTGACGAAGTATTTCTTCTGGCCTCGTAATGATGCTTGGGAAGAGTTGAAAAAAGAACTCGAATCCAAACACT
GGATCAGTGATTTAGATCGCGTCGAATTGCTCAATAAGGCAACAGAAGTGATTAACTACTGGCAAGAGGAAGGCAGAAAC
CGTCCAATGGCAGAGGCTCAGTTAAAATTTCCTGAAGTTACCTTTACAGGTAGCGCTTGA

Upstream 100 bases:

>100_bases
CCCTTGCGGTACTAGTTTGGTCAACTGGTAAGGTATTGAGTTAAAATAAGCGATCGCAAACTTAATTAACTTAGTACCCG
GATATTGGCCGGAGGTGTGA

Downstream 100 bases:

>100_bases
TTTAATGATGCTAGTGCAGGAAGGCGTTAAGCCTTCATACACTAACCATCATAAAAAACTTTAGGGTAAAGGGTAGTATT
GTTACTGAGTACTTAGTACT

Product: hypothetical protein

Products: NA

Alternate protein names: Ycf65-like protein

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MSKFILKILWLDENVALAVDQVVGKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN
RPMAEAQLKFPEVTFTGSA

Sequences:

>Translated_99_residues
MSKFILKILWLDENVALAVDQVVGKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRN
RPMAEAQLKFPEVTFTGSA
>Mature_98_residues
SKFILKILWLDENVALAVDQVVGKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVELLNKATEVINYWQEEGRNR
PMAEAQLKFPEVTFTGSA

Specific function: Probably a ribosomal protein or a ribosome-associated protein

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PSRP3/ycf65 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRP3_ANAVT (Q3M6B5)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_324366.1
- STRING:   Q3M6B5
- GeneID:   3678506
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_3866
- NMPDR:   fig|240292.3.peg.4273
- eggNOG:   NOG28579
- HOGENOM:   HBG635073
- OMA:   WPRNDAW
- ProtClustDB:   PRK02724
- BioCyc:   AVAR240292:AVA_3866-MONOMER
- GO:   GO:0009536
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00619
- InterPro:   IPR006924
- ProDom:   PD015453

Pfam domain/function: PF04839 PSRP-3_Ycf65

EC number: NA

Molecular weight: Translated: 11586; Mature: 11455

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFILKILWLDENVALAVDQVVGKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDR
CCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH
VELLNKATEVINYWQEEGRNRPMAEAQLKFPEVTFTGSA
HHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCEEECCCC
>Mature Secondary Structure 
SKFILKILWLDENVALAVDQVVGKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDR
CCCEEEEEEECCCHHHHHHHHHCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH
VELLNKATEVINYWQEEGRNRPMAEAQLKFPEVTFTGSA
HHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA