Click here to switch to the map view.

The map label for this gene is farR [C]

Identifier: 75909938

GI number: 75909938

Start: 4645494

End: 4646477

Strand: Direct

Name: farR [C]

Synonym: Ava_3734

Alternate gene names: 75909938

Gene position: 4645494-4646477 (Clockwise)

Preceding gene: 75909935

Following gene: 75909940

Centisome position: 72.98

GC content: 46.54

Gene sequence:

>984_bases
ATGATTCAATTCCGTATTCAGCCAGATAGTGAGATTCCCGCATCAACCCAACTATTTAACCAACTCAGGTTTGCGATCGC
TTCTCGGCAATATCCACCCGCATACAAATTGCCCAGCACCAGGGCTTTGGCAATGCAAACGGGGTTACACCGCAATACTA
TTAGTAAAGTTTATCGTCAGTTAGAGGAAGACGGTTTTGTTGAAAGTTTAGCAGGCTCAGGGATTTATGTCCGCGCTCAA
GGTCATGAGGGTGGTAGCAGGCTACAATCGCCCATCCTCACACAACATCCTGAAGCATCAAAAGTTTTACAACAAGCACT
GGATGAATTACTGGGACAAGGCTATTCACTCAGCCAAGCAAGAGAAATATTTTTGGCAGAAATTGACTGGCGCTTGCGTT
GTAGTGCGCGGGTACTGGTAGCATCTCCGACTCAAGATATGGGTGTGGGGGAGTTAATGGCTTATGAGTTAGAAGAAGAA
CTAGAAATTCCCGTGCAGATAGTGGCGATAGATGAGTTAGCAGCCGTACTAGATAAAACCACTTCCGCTACAGTTGTCAC
CAGTCGCTATTTTATCAACGATGTGGAAGCGATCGCCGCCCCTAAAGCTATCCGTGTCATCCCTCTAGATATCTACGACT
ACAACAAAGAAATCAACCTGCTGAAAAACCTGCCCAAAGATAACTGTGTAGGAATAGTCAGCCTCAGTTCGGGAATTGGT
CGCCAAGCAGAAGTCATCCTCCACGGCTTGCGGGGTGACGAGTTATTAGTCATGACCACCCAACCAAAAGATAATTACAA
AATGCAGGCGATCGTCAAGCGCGCCGAAGTGATTATCTGTGACCAAGCCTGTTATGCAACCGTACAAGCCGCCGTCCAAG
CCGCCTCCGAAGACATCATCCGTCCACCAAAATTAATCAAGGTAGATAATTACATCGGCGCAAACTCAATTAACTTACTC
AAACGAGAACTAGGCTTAGGTTGA

Upstream 100 bases:

>100_bases
ATTTAAACCCGAAAGTACCCAACATAAAATCGCCAAAATGTTTGGGTTGTTTATTGTTATTCATGTTGAATTTTGAATTG
CTTATTCAGGAGTTTGGGTG

Downstream 100 bases:

>100_bases
CACTCTCCACCCTATAAGTCGTGTAGGGTGCGTCAGATATCAAAAATCTGTTCATGGAATGGATAGCATTTAAGTCTTCT
GACGCACCCTACTAATATGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator GntR Family; Transcriptional Regulator GntR Family Protein; GntR Family Transcriptional Regulatory Protein; GntR Family Transcriptional Repressor

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIQFRIQPDSEIPASTQLFNQLRFAIASRQYPPAYKLPSTRALAMQTGLHRNTISKVYRQLEEDGFVESLAGSGIYVRAQ
GHEGGSRLQSPILTQHPEASKVLQQALDELLGQGYSLSQAREIFLAEIDWRLRCSARVLVASPTQDMGVGELMAYELEEE
LEIPVQIVAIDELAAVLDKTTSATVVTSRYFINDVEAIAAPKAIRVIPLDIYDYNKEINLLKNLPKDNCVGIVSLSSGIG
RQAEVILHGLRGDELLVMTTQPKDNYKMQAIVKRAEVIICDQACYATVQAAVQAASEDIIRPPKLIKVDNYIGANSINLL
KRELGLG

Sequences:

>Translated_327_residues
MIQFRIQPDSEIPASTQLFNQLRFAIASRQYPPAYKLPSTRALAMQTGLHRNTISKVYRQLEEDGFVESLAGSGIYVRAQ
GHEGGSRLQSPILTQHPEASKVLQQALDELLGQGYSLSQAREIFLAEIDWRLRCSARVLVASPTQDMGVGELMAYELEEE
LEIPVQIVAIDELAAVLDKTTSATVVTSRYFINDVEAIAAPKAIRVIPLDIYDYNKEINLLKNLPKDNCVGIVSLSSGIG
RQAEVILHGLRGDELLVMTTQPKDNYKMQAIVKRAEVIICDQACYATVQAAVQAASEDIIRPPKLIKVDNYIGANSINLL
KRELGLG
>Mature_327_residues
MIQFRIQPDSEIPASTQLFNQLRFAIASRQYPPAYKLPSTRALAMQTGLHRNTISKVYRQLEEDGFVESLAGSGIYVRAQ
GHEGGSRLQSPILTQHPEASKVLQQALDELLGQGYSLSQAREIFLAEIDWRLRCSARVLVASPTQDMGVGELMAYELEEE
LEIPVQIVAIDELAAVLDKTTSATVVTSRYFINDVEAIAAPKAIRVIPLDIYDYNKEINLLKNLPKDNCVGIVSLSSGIG
RQAEVILHGLRGDELLVMTTQPKDNYKMQAIVKRAEVIICDQACYATVQAAVQAASEDIIRPPKLIKVDNYIGANSINLL
KRELGLG

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36106; Mature: 36106

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQFRIQPDSEIPASTQLFNQLRFAIASRQYPPAYKLPSTRALAMQTGLHRNTISKVYRQ
CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
LEEDGFVESLAGSGIYVRAQGHEGGSRLQSPILTQHPEASKVLQQALDELLGQGYSLSQA
HHHCCCHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
REIFLAEIDWRLRCSARVLVASPTQDMGVGELMAYELEEELEIPVQIVAIDELAAVLDKT
HHEEEEECCEEEEECEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCC
TSATVVTSRYFINDVEAIAAPKAIRVIPLDIYDYNKEINLLKNLPKDNCVGIVSLSSGIG
CCCEEEEHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCCC
RQAEVILHGLRGDELLVMTTQPKDNYKMQAIVKRAEVIICDQACYATVQAAVQAASEDII
CCEEHHEECCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHC
RPPKLIKVDNYIGANSINLLKRELGLG
CCCCEEEECCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIQFRIQPDSEIPASTQLFNQLRFAIASRQYPPAYKLPSTRALAMQTGLHRNTISKVYRQ
CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHH
LEEDGFVESLAGSGIYVRAQGHEGGSRLQSPILTQHPEASKVLQQALDELLGQGYSLSQA
HHHCCCHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
REIFLAEIDWRLRCSARVLVASPTQDMGVGELMAYELEEELEIPVQIVAIDELAAVLDKT
HHEEEEECCEEEEECEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCC
TSATVVTSRYFINDVEAIAAPKAIRVIPLDIYDYNKEINLLKNLPKDNCVGIVSLSSGIG
CCCEEEEHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCCC
RQAEVILHGLRGDELLVMTTQPKDNYKMQAIVKRAEVIICDQACYATVQAAVQAASEDII
CCEEHHEECCCCCEEEEEECCCCCCHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHC
RPPKLIKVDNYIGANSINLLKRELGLG
CCCCEEEECCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA