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The map label for this gene is exeD [H]

Identifier: 75909894

GI number: 75909894

Start: 4596903

End: 4599338

Strand: Direct

Name: exeD [H]

Synonym: Ava_3689

Alternate gene names: 75909894

Gene position: 4596903-4599338 (Clockwise)

Preceding gene: 75909893

Following gene: 75909898

Centisome position: 72.21

GC content: 44.66

Gene sequence:

>2436_bases
GTGAAACACGTTCATGGTAATGGATTAGTTTTAGGTGCTGCTGCTTTTGTATTTTTGGCAGCACAGCCTGTGTGGGCGCA
AACCACACAAATTACAGAAGTCAAGCTAAATCCAGGCAATGGTGGACTTAGCGTTGTTTTAAAAACTTCTGCCGGTTCTC
GTCCACAAGTTTTTACAACAAAAAGAGGTAAAGCTTTAGTTGCAGATGTTATTAATACGCAACTACGGCTTCCACAAGGT
AATAACTTTCGCCAAGATAAACCTGCGGCGGGAATTGCCTCCGTTGAGGTGGTGCAACTAGATGCTAATAGTATCCGCGT
CATCGTGACTGGTGATACTGATGCACCAGTTAGCCAACCTGTCACCCGTCAACAAGATGGCATCACCCTCAGCTTAACGC
CATCATCAGGCACCACAGCATCAGCGCCAGTCACCCCCAGACCACCTGTATCTACAACACCGCCAGCTGCTACCCCAGCA
CAAACAGGAGCCGTCCCCAATGTGCTTGTACCTAATCCAGTAGTAACAATTGATGGCAAACCAGCCCAGCCTGCTGGCCC
TGGTCAACCACTAAGCCAAGCGCCGCCGTTCTTACCTAGAGCCGTTGCCCCTCCTGTTGGGGATATTGCCATTTCTGCGA
CTGATGCTTCGCCCAGTACGATAGATTTAGGTACTCAGGAACGTGTGCCTCGTCTGGTGTTGCGGGATGCACCAGTTAGG
GAAGTTTTATCATTACTGGCTCGTGCTGCCAATCTAAACTTAGCTTATATAAGTGATGGAGCTGGTGGGACACCTGGGGC
TGGAGGTCAAGCCATTTCTCAAACAATTTCACTAGATATAGAAAATGAGCCAGTGCAAGATGTGTTTAACTATGTCTTGC
GTCTGAGTGGTTTAGAAGCTAACCGGAGCAATAGAACGATTTTTGTTGGGCCGAAATTACCTAACTCTACTCGTGATGTG
GTGATGCGTAACCTGCGGCTTAATCAGGTAACTGTAGGGGTTGCTTTAAATTTCTTGGTTGGCTTGGGGGCTGAAAGTGC
CATTAGCCGTGAACGACTGGTTACTAGTGTTAATGCTGTACCTGTAGGCGGTGCAGCTAATGCCGCAGTCACACAAACTC
AAACTACTACAGAAAGCAGAATAGAGACTCAAAGAGTTGATTTTCAAGATTCCAAGCCTTTATTAAGAGGTTTACAAGCA
TTAGGGGATGAGCGTACTAATTCTGTGACTTTGATTGGACCACCCAAGCAAATAGAGATGGCAATAGCTCAACTAACTCA
ACTGGATATCCGTCGTCGTCAAGTGGTAGTAAACGTCAAAATTGTTGATGTCAACCTTTTAAATCTTCAAGACACAAACG
CGAGTTTTTCTTTTGGACTTGGTAACAACTACTTCACAAGTGATGGCGGTGCAGCAACTCTAAATTTTGGTGGTTCTAGA
CCAGCGACTAGTTCCGAAGTTGCAAACAGTTTGACTGGTACACCGACTATTGAAAATCCTATTACAGGAACGCCTTTTCT
TAACCCCAACAGTAGCGTTTCTATTCCAGGAACTACTCCAGGTACAGTAGTAGTAGACGCAAACGGCAACATTACTAGAG
TTGCAAATCCTGGAAGTGGCTCTTTTTATCAACCGATTGCTCCTAGTAATACAAACCCCCTACAACCAGGTTTCTCTGAT
ATTACTCCGGCAACTGATAACATCATTACAAGGAATGCGGATGGTACAACAACCATCACACAAGGTACCCTTGGTACAGC
CACTACATCTTTACCAACTATATACCAATTCCCTAAACGTCTTCTCGCTAGTTTGCAGGCTCAGGTACAAAATGGCAACG
CCAAAGTTTTGACTGATCCGACTTTGATTGTACAGGAAGGTCAACAGGCTGTAGTAAAACTAACTACAGAAGTGTTTGGA
GGGTTTGAAGAGTCAGGGCAAAGTTCATCCACAGGATCAAATACTCAATCTTCCTCTACCAAAAAACCTATTATCAAAGA
AGCTGGTCTAAGCCTTAATGTGAAAGTTGAGCGTATTGATGATAATGGTTTTGTTTCTCTGTCCGTTGCACCAACCGTCT
CTGCGCCTGGTGGTTCAACACAAACTAGTGATGGTCAGATTACCTTGTTATCAGCTAGAAGTCTTCAATCTGGTTTAATC
CGTCTGCGAGATGGTCAAACATTAATTCTCAGTGGCATTATTCAAGAATCAGATAGATCAACTGTATCCAAGCTTCCTAT
CTTAGGTGATCTTCCGTTGATTGGTTCACTATTTAGAAAAACCAACAGAACCAATGAGCGTAGAGAGGTAATTGTACTTC
TGACACCTCAGGTTATGGATGACTCTCAAAACTCTTCTTACGGCTACAACTACAGTCCTAGCCCAGAAGTACGTCAATTG
CTTGAGCGTCGTGGTTTAAATACTCCCAGGCGGTAA

Upstream 100 bases:

>100_bases
GGCAGGGAGCAGGGGGAGAAATCTTATTCAATACTCTCTACTCAGCAGTTTTTACTTCGATATTTTTAGTTACAAGACTT
TATTAGGTGAGGAATGAACT

Downstream 100 bases:

>100_bases
GATAGTGTACCAATTCGTAATTTCCAATGCTACCTGAGGCTTTGGCGAATTGGTATTCGTAATATAATTTCAATTTCTAG
ACTAGCCACAAGCTTTTGAG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 811; Mature: 811

Protein sequence:

>811_residues
MKHVHGNGLVLGAAAFVFLAAQPVWAQTTQITEVKLNPGNGGLSVVLKTSAGSRPQVFTTKRGKALVADVINTQLRLPQG
NNFRQDKPAAGIASVEVVQLDANSIRVIVTGDTDAPVSQPVTRQQDGITLSLTPSSGTTASAPVTPRPPVSTTPPAATPA
QTGAVPNVLVPNPVVTIDGKPAQPAGPGQPLSQAPPFLPRAVAPPVGDIAISATDASPSTIDLGTQERVPRLVLRDAPVR
EVLSLLARAANLNLAYISDGAGGTPGAGGQAISQTISLDIENEPVQDVFNYVLRLSGLEANRSNRTIFVGPKLPNSTRDV
VMRNLRLNQVTVGVALNFLVGLGAESAISRERLVTSVNAVPVGGAANAAVTQTQTTTESRIETQRVDFQDSKPLLRGLQA
LGDERTNSVTLIGPPKQIEMAIAQLTQLDIRRRQVVVNVKIVDVNLLNLQDTNASFSFGLGNNYFTSDGGAATLNFGGSR
PATSSEVANSLTGTPTIENPITGTPFLNPNSSVSIPGTTPGTVVVDANGNITRVANPGSGSFYQPIAPSNTNPLQPGFSD
ITPATDNIITRNADGTTTITQGTLGTATTSLPTIYQFPKRLLASLQAQVQNGNAKVLTDPTLIVQEGQQAVVKLTTEVFG
GFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNGFVSLSVAPTVSAPGGSTQTSDGQITLLSARSLQSGLI
RLRDGQTLILSGIIQESDRSTVSKLPILGDLPLIGSLFRKTNRTNERREVIVLLTPQVMDDSQNSSYGYNYSPSPEVRQL
LERRGLNTPRR

Sequences:

>Translated_811_residues
MKHVHGNGLVLGAAAFVFLAAQPVWAQTTQITEVKLNPGNGGLSVVLKTSAGSRPQVFTTKRGKALVADVINTQLRLPQG
NNFRQDKPAAGIASVEVVQLDANSIRVIVTGDTDAPVSQPVTRQQDGITLSLTPSSGTTASAPVTPRPPVSTTPPAATPA
QTGAVPNVLVPNPVVTIDGKPAQPAGPGQPLSQAPPFLPRAVAPPVGDIAISATDASPSTIDLGTQERVPRLVLRDAPVR
EVLSLLARAANLNLAYISDGAGGTPGAGGQAISQTISLDIENEPVQDVFNYVLRLSGLEANRSNRTIFVGPKLPNSTRDV
VMRNLRLNQVTVGVALNFLVGLGAESAISRERLVTSVNAVPVGGAANAAVTQTQTTTESRIETQRVDFQDSKPLLRGLQA
LGDERTNSVTLIGPPKQIEMAIAQLTQLDIRRRQVVVNVKIVDVNLLNLQDTNASFSFGLGNNYFTSDGGAATLNFGGSR
PATSSEVANSLTGTPTIENPITGTPFLNPNSSVSIPGTTPGTVVVDANGNITRVANPGSGSFYQPIAPSNTNPLQPGFSD
ITPATDNIITRNADGTTTITQGTLGTATTSLPTIYQFPKRLLASLQAQVQNGNAKVLTDPTLIVQEGQQAVVKLTTEVFG
GFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNGFVSLSVAPTVSAPGGSTQTSDGQITLLSARSLQSGLI
RLRDGQTLILSGIIQESDRSTVSKLPILGDLPLIGSLFRKTNRTNERREVIVLLTPQVMDDSQNSSYGYNYSPSPEVRQL
LERRGLNTPRR
>Mature_811_residues
MKHVHGNGLVLGAAAFVFLAAQPVWAQTTQITEVKLNPGNGGLSVVLKTSAGSRPQVFTTKRGKALVADVINTQLRLPQG
NNFRQDKPAAGIASVEVVQLDANSIRVIVTGDTDAPVSQPVTRQQDGITLSLTPSSGTTASAPVTPRPPVSTTPPAATPA
QTGAVPNVLVPNPVVTIDGKPAQPAGPGQPLSQAPPFLPRAVAPPVGDIAISATDASPSTIDLGTQERVPRLVLRDAPVR
EVLSLLARAANLNLAYISDGAGGTPGAGGQAISQTISLDIENEPVQDVFNYVLRLSGLEANRSNRTIFVGPKLPNSTRDV
VMRNLRLNQVTVGVALNFLVGLGAESAISRERLVTSVNAVPVGGAANAAVTQTQTTTESRIETQRVDFQDSKPLLRGLQA
LGDERTNSVTLIGPPKQIEMAIAQLTQLDIRRRQVVVNVKIVDVNLLNLQDTNASFSFGLGNNYFTSDGGAATLNFGGSR
PATSSEVANSLTGTPTIENPITGTPFLNPNSSVSIPGTTPGTVVVDANGNITRVANPGSGSFYQPIAPSNTNPLQPGFSD
ITPATDNIITRNADGTTTITQGTLGTATTSLPTIYQFPKRLLASLQAQVQNGNAKVLTDPTLIVQEGQQAVVKLTTEVFG
GFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNGFVSLSVAPTVSAPGGSTQTSDGQITLLSARSLQSGLI
RLRDGQTLILSGIIQESDRSTVSKLPILGDLPLIGSLFRKTNRTNERREVIVLLTPQVMDDSQNSSYGYNYSPSPEVRQL
LERRGLNTPRR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG4796

COG function: function code U; Type II secretory pathway, component HofQ

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=199, Percent_Identity=28.1407035175879, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87082242, Length=380, Percent_Identity=23.9473684210526, Blast_Score=63, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 85019; Mature: 85019

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHVHGNGLVLGAAAFVFLAAQPVWAQTTQITEVKLNPGNGGLSVVLKTSAGSRPQVFTT
CCEECCCCEEHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEE
KRGKALVADVINTQLRLPQGNNFRQDKPAAGIASVEVVQLDANSIRVIVTGDTDAPVSQP
CCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCC
VTRQQDGITLSLTPSSGTTASAPVTPRPPVSTTPPAATPAQTGAVPNVLVPNPVVTIDGK
CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCEEEECCC
PAQPAGPGQPLSQAPPFLPRAVAPPVGDIAISATDASPSTIDLGTQERVPRLVLRDAPVR
CCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCHHHCCHHHHCCCCHH
EVLSLLARAANLNLAYISDGAGGTPGAGGQAISQTISLDIENEPVQDVFNYVLRLSGLEA
HHHHHHHHHHCCEEEEEECCCCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHHCCCCC
NRSNRTIFVGPKLPNSTRDVVMRNLRLNQVTVGVALNFLVGLGAESAISRERLVTSVNAV
CCCCCEEEECCCCCCCHHHHHHHHCEECEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCE
PVGGAANAAVTQTQTTTESRIETQRVDFQDSKPLLRGLQALGDERTNSVTLIGPPKQIEM
ECCCCCCCEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHH
AIAQLTQLDIRRRQVVVNVKIVDVNLLNLQDTNASFSFGLGNNYFTSDGGAATLNFGGSR
HHHHHHHHHHCCEEEEEEEEEEEEEEEEEECCCCEEEEECCCCEEECCCCEEEEECCCCC
PATSSEVANSLTGTPTIENPITGTPFLNPNSSVSIPGTTPGTVVVDANGNITRVANPGSG
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEECCCCEEEEECCCCC
SFYQPIAPSNTNPLQPGFSDITPATDNIITRNADGTTTITQGTLGTATTSLPTIYQFPKR
CEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHH
LLASLQAQVQNGNAKVLTDPTLIVQEGQQAVVKLTTEVFGGFEESGQSSSTGSNTQSSST
HHHHHHHHHCCCCEEEEECCEEEEECCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCC
KKPIIKEAGLSLNVKVERIDDNGFVSLSVAPTVSAPGGSTQTSDGQITLLSARSLQSGLI
CCCHHHHCCCEEEEEEEEECCCCEEEEEECCEECCCCCCCCCCCCCEEEEECCCCCCCCE
RLRDGQTLILSGIIQESDRSTVSKLPILGDLPLIGSLFRKTNRTNERREVIVLLTPQVMD
EEECCCEEEEEEHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCHHCC
DSQNSSYGYNYSPSPEVRQLLERRGLNTPRR
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKHVHGNGLVLGAAAFVFLAAQPVWAQTTQITEVKLNPGNGGLSVVLKTSAGSRPQVFTT
CCEECCCCEEHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCEEEEE
KRGKALVADVINTQLRLPQGNNFRQDKPAAGIASVEVVQLDANSIRVIVTGDTDAPVSQP
CCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCC
VTRQQDGITLSLTPSSGTTASAPVTPRPPVSTTPPAATPAQTGAVPNVLVPNPVVTIDGK
CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCEEEECCC
PAQPAGPGQPLSQAPPFLPRAVAPPVGDIAISATDASPSTIDLGTQERVPRLVLRDAPVR
CCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCHHHCCHHHHCCCCHH
EVLSLLARAANLNLAYISDGAGGTPGAGGQAISQTISLDIENEPVQDVFNYVLRLSGLEA
HHHHHHHHHHCCEEEEEECCCCCCCCCCCHHEEEEEEEEECCCCHHHHHHHHHHHCCCCC
NRSNRTIFVGPKLPNSTRDVVMRNLRLNQVTVGVALNFLVGLGAESAISRERLVTSVNAV
CCCCCEEEECCCCCCCHHHHHHHHCEECEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCE
PVGGAANAAVTQTQTTTESRIETQRVDFQDSKPLLRGLQALGDERTNSVTLIGPPKQIEM
ECCCCCCCEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHH
AIAQLTQLDIRRRQVVVNVKIVDVNLLNLQDTNASFSFGLGNNYFTSDGGAATLNFGGSR
HHHHHHHHHHCCEEEEEEEEEEEEEEEEEECCCCEEEEECCCCEEECCCCEEEEECCCCC
PATSSEVANSLTGTPTIENPITGTPFLNPNSSVSIPGTTPGTVVVDANGNITRVANPGSG
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEECCCCEEEEECCCCC
SFYQPIAPSNTNPLQPGFSDITPATDNIITRNADGTTTITQGTLGTATTSLPTIYQFPKR
CEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCHHHHHHHH
LLASLQAQVQNGNAKVLTDPTLIVQEGQQAVVKLTTEVFGGFEESGQSSSTGSNTQSSST
HHHHHHHHHCCCCEEEEECCEEEEECCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCC
KKPIIKEAGLSLNVKVERIDDNGFVSLSVAPTVSAPGGSTQTSDGQITLLSARSLQSGLI
CCCHHHHCCCEEEEEEEEECCCCEEEEEECCEECCCCCCCCCCCCCEEEEECCCCCCCCE
RLRDGQTLILSGIIQESDRSTVSKLPILGDLPLIGSLFRKTNRTNERREVIVLLTPQVMD
EEECCCEEEEEEHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCHHCC
DSQNSSYGYNYSPSPEVRQLLERRGLNTPRR
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]