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The map label for this gene is rbn [C]

Identifier: 75909614

GI number: 75909614

Start: 4233438

End: 4234337

Strand: Direct

Name: rbn [C]

Synonym: Ava_3408

Alternate gene names: 75909614

Gene position: 4233438-4234337 (Clockwise)

Preceding gene: 75909611

Following gene: 75909615

Centisome position: 66.5

GC content: 39.44

Gene sequence:

>900_bases
ATGAACTTAAAAGCGATTTGGCAACTTTTTCAAGAGGCGTTGCAAGAGTGGAATGATGATAAAGCCTCACGTTTGGCAGC
TGCATTAGCTTACTATACGGTGTTTTCTATCGCACCTTTGTTGATTATTGTCATTGCGATCGCCGGTGCAGTATTTGGAG
AAGAAGCTGCTAGGGGCGAAATTGTGCAGCAAATTCAAGGTTTAGTAGGTAGAGATGGGGCAGAGTTTATTGAAACTGCT
ATTCAAAACGTAGATAGGCCAAAGACGGGTACGATAGCTTCTCTTATTAGTATTGCTCTTTTATTATTGGGTGCGACTGG
TGTTTTTATCGAGTTACAAGACTCCCTCAACACCATTTGGGAAGTACAACCAAAACCAGGACGCGGTGTCAAGGGTATTT
TTCGCCAGCGTTTTTTATCTTTTGGCATGGTTTTAGGTATTGGCTTCTTGCTGTTAGTTTCTCTGGTAATTAGTACTGTA
TTATCAACGCTAGTTAATTATTTTGGTGGTTTACTACCGGGTGTAGATTTTCTTTGGCAATTGGTTAACTTTATTATTTC
TTTTGCCATCACTACGTTGCTGTTTGCATTAATTTTCAAGGTTTTACCAGATGTCAGAATTACTTGGAATGATGTTTTAG
TTGGTGCAATTCTTACCTCAATTTTATTTTCTATCGGTAGATTTTTATTAGGACAATATTTAGGTAATGCTGGTTTTGGT
TCAGCCTATGGCGCAGCTGGTTCAGTCGTGTTGATTTTAGCTTGGGTTTACTATACTGCCCAAATTCTCTTTTTCGGTGC
TGAGTTTACCCAGGTTTATGCCAGAAAATACGGCAGACGTATTGTTCCAACTCGTCACGCTATGCCTTTAAATGATACAA
ATTCGGGAAATCGGCATTAG

Upstream 100 bases:

>100_bases
AAACTCATAAGTACCCAGGGAAAGATGTCATTACTAAGGAAATCAGTATCAAATATATCAGGAGATGAATCGGCATCTTC
CTAGAAGGGAGAATGAGGAA

Downstream 100 bases:

>100_bases
AGACGGTAAGGCATAGAGAAGATAGGGGAATCAACAATTAAAAATTACGAATTATGATGAATTGGTTTTCTATAAATTGG
CACGCTATTTTTGTGCCTAG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNLKAIWQLFQEALQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGEIVQQIQGLVGRDGAEFIETA
IQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIWEVQPKPGRGVKGIFRQRFLSFGMVLGIGFLLLVSLVISTV
LSTLVNYFGGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRFLLGQYLGNAGFG
SAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRH

Sequences:

>Translated_299_residues
MNLKAIWQLFQEALQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGEIVQQIQGLVGRDGAEFIETA
IQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIWEVQPKPGRGVKGIFRQRFLSFGMVLGIGFLLLVSLVISTV
LSTLVNYFGGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRFLLGQYLGNAGFG
SAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRH
>Mature_299_residues
MNLKAIWQLFQEALQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGEIVQQIQGLVGRDGAEFIETA
IQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIWEVQPKPGRGVKGIFRQRFLSFGMVLGIGFLLLVSLVISTV
LSTLVNYFGGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRFLLGQYLGNAGFG
SAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRH

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=273, Percent_Identity=26.3736263736264, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32710; Mature: 32710

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKAIWQLFQEALQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGE
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVQQIQGLVGRDGAEFIETAIQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIW
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHEEEEHHHHHHHE
EVQPKPGRGVKGIFRQRFLSFGMVLGIGFLLLVSLVISTVLSTLVNYFGGLLPGVDFLWQ
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRFLLGQYLGNAGFG
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLKAIWQLFQEALQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGE
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVQQIQGLVGRDGAEFIETAIQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIW
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHEEEEHHHHHHHE
EVQPKPGRGVKGIFRQRFLSFGMVLGIGFLLLVSLVISTVLSTLVNYFGGLLPGVDFLWQ
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRFLLGQYLGNAGFG
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA