Click here to switch to the map view.

The map label for this gene is srpB [H]

Identifier: 75909595

GI number: 75909595

Start: 4215105

End: 4215560

Strand: Direct

Name: srpB [H]

Synonym: Ava_3389

Alternate gene names: 75909595

Gene position: 4215105-4215560 (Clockwise)

Preceding gene: 75909593

Following gene: 75909599

Centisome position: 66.22

GC content: 40.35

Gene sequence:

>456_bases
TTGCTAGATAACTACTACCTGGAACCAGACGATTTTTTCAAGCTGATCTTTCGGCTTTTCTTAGCTTTACTTATTGGAGC
TATTATCGGCATAGAAAGAGAACGACGGCGTAAACCAGCAGGCTTAAGAACTCATATGTTGGTTAGCTTTGGGTCTGCCA
TATTTGTTGTTATACCTTTACAAATTATCTCCATACAATCACACCCAGAAGTGGTTAGCCGAGTAATTCAAGGTATTGCG
GCTGGTGTGGGATTTCTCGGTGCTGGTGAAATTGTCCGCGAATCTTCACAAGTATCACAACGTCTGGAAGTTCATGGACT
TACCTCAGCAGCAGCTATCTGGGTTTCCTCTGGGTTGGGAATTGCTGCTGGTTGTGGTTTATGGCAATTAAGTTTAGTTG
GAGCTATCATAACTTTTGCGATTTTAAATATTTTTAAGAGATTAGAAAATAGTTAA

Upstream 100 bases:

>100_bases
TTTAAATAAAAAATATACAATATAAATAGAATGTTTTTCAAAATTTGCGGATATAAGTTATACATGACATAGAGTATGTT
TTCTTATATCAGAGATAAAA

Downstream 100 bases:

>100_bases
TCATTTAAGTTTTTATCAAATAAATTTAATGCCTTGGCAAATGCAGGTTCTTCTGCTTGAATTTGCATAATCGATTTAAC
TAAATAAATAAAATTCCAAT

Product: MgtC/SapB transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLDNYYLEPDDFFKLIFRLFLALLIGAIIGIERERRRKPAGLRTHMLVSFGSAIFVVIPLQIISIQSHPEVVSRVIQGIA
AGVGFLGAGEIVRESSQVSQRLEVHGLTSAAAIWVSSGLGIAAGCGLWQLSLVGAIITFAILNIFKRLENS

Sequences:

>Translated_151_residues
MLDNYYLEPDDFFKLIFRLFLALLIGAIIGIERERRRKPAGLRTHMLVSFGSAIFVVIPLQIISIQSHPEVVSRVIQGIA
AGVGFLGAGEIVRESSQVSQRLEVHGLTSAAAIWVSSGLGIAAGCGLWQLSLVGAIITFAILNIFKRLENS
>Mature_151_residues
MLDNYYLEPDDFFKLIFRLFLALLIGAIIGIERERRRKPAGLRTHMLVSFGSAIFVVIPLQIISIQSHPEVVSRVIQGIA
AGVGFLGAGEIVRESSQVSQRLEVHGLTSAAAIWVSSGLGIAAGCGLWQLSLVGAIITFAILNIFKRLENS

Specific function: Unknown

COG id: COG1285

COG function: function code S; Uncharacterized membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MgtC/SapB family [H]

Homologues:

Organism=Escherichia coli, GI1789924, Length=139, Percent_Identity=35.9712230215827, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003416 [H]

Pfam domain/function: PF02308 MgtC [H]

EC number: NA

Molecular weight: Translated: 16419; Mature: 16419

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDNYYLEPDDFFKLIFRLFLALLIGAIIGIERERRRKPAGLRTHMLVSFGSAIFVVIPL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHH
QIISIQSHPEVVSRVIQGIAAGVGFLGAGEIVRESSQVSQRLEVHGLTSAAAIWVSSGLG
HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
IAAGCGLWQLSLVGAIITFAILNIFKRLENS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDNYYLEPDDFFKLIFRLFLALLIGAIIGIERERRRKPAGLRTHMLVSFGSAIFVVIPL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHCCHHHHHHHH
QIISIQSHPEVVSRVIQGIAAGVGFLGAGEIVRESSQVSQRLEVHGLTSAAAIWVSSGLG
HHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
IAAGCGLWQLSLVGAIITFAILNIFKRLENS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7536734 [H]