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The map label for this gene is rfbC [H]

Identifier: 75909555

GI number: 75909555

Start: 4168201

End: 4169421

Strand: Direct

Name: rfbC [H]

Synonym: Ava_3349

Alternate gene names: 75909555

Gene position: 4168201-4169421 (Clockwise)

Preceding gene: 75909554

Following gene: 75909556

Centisome position: 65.48

GC content: 35.38

Gene sequence:

>1221_bases
ATGGTAAAAAAAATTAAATTACCCAAATTTCTCAAAGACATAATTAAGAAAAACATTATCGTAGATAGATATATAAGAGA
TGCTACCGCACTTGCGGGTATCATGGATTTCTCCTGTGCAGATATTTCTGAAATTCAGCAGCATCCAGAGCGAGTCAATC
AATCAGGCAGTCAAACGATAAATTGGTATGTACCACCGTTTGAAAATGCCTTTTATGGTGGTGTTATGACCATACTCCGC
ACTGCTGACTATTTACATCAGCATGGAAAAATCAAACAAAGATTTTTAATTTGTGGAGATAGTAATGCTGAAGTGATGCT
TACTAAGATTACTAACGCTTTTCCTAATTTGAATAGTGCTGAAGTAATCATTCTCAACTCCATAGAAGCTATTCAGAACA
TACCAGCATCAGACTTCTCAATAGCTACTCTTTGGACAACAGCTTATGTCTTATTAAAAGTAAAAAATACTGGCTTAAAA
TTCTATTTTATACAAGACTTTGAACCACTATTTTATCCTGCTGGATCAACTTACGCTCAAGCTGAGGCAACTTACCGTTT
TGGGTTCTATGGAATTGCTAACACTATCAGTTTAAGAAAAATATATGAAACTGAATATACTGGCATAGCGACTCATTTCA
CACCATGCGTAGATACAAAAGTCTTTTATCCTGACAGTAGCCTTAAGAAAAATTCTACTCCCAAGCGCGTATTCTTTTAT
GGAAGACCAGGACATCCGCGTAATGGATTTGAGTTAGCAGTTGAAGCAATGCGTAAGCTGAAAACCCGTTATGGTTCTCA
GATAGAAATCTTATCTGCTGGTGCTGATTGGAAGCCTAAAGAATATGGTTTAGAAGGAGTTATAGAAAACCTGGGACTCT
TAAGTTATGAAGAAACAGGCAATCTATATCGTTCTTGCCATGTTGGACTTTCAATGATGATGACCAAACACCCATCTTAT
TTACCTTTTGAGATGATGGCTTGTGGTGTATTGGTTGTATCGAATATTAATTCAAGTACTCAGTGGTTATTGAAAGACAG
GGAAAATTGTTTATTATCCCATCCTAGCGCTAGTTGTATCGCTGAAACAATATCAGAAGCTATTGATAAGTATGATGAGT
TTGATGTAATTAGAAACAATGCAATTAATTGTATTAAAGATAACCATGCTGACTGGTCTGTTGAGATTAAAAAAATCCAC
GATTTTATTCAAAGTCAATAA

Upstream 100 bases:

>100_bases
CCAAAAAATGATATTCCGGAATTTGACGATTCTCTAGGAAATGATCCTTATTTTCATCCCGCCTTTGCTTCAGTTGTTCC
TTTAAAATTAAGAGTTAAAA

Downstream 100 bases:

>100_bases
ATCACCATCTGTGAGTAAAGATCAAATCTATCTAAATTAATTTAATTCCGTACTTGAAAAGTATGATAGTACTTAAATAC
GAATTAATAAACTAATTGAT

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MVKKIKLPKFLKDIIKKNIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTINWYVPPFENAFYGGVMTILR
TADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNSAEVIILNSIEAIQNIPASDFSIATLWTTAYVLLKVKNTGLK
FYFIQDFEPLFYPAGSTYAQAEATYRFGFYGIANTISLRKIYETEYTGIATHFTPCVDTKVFYPDSSLKKNSTPKRVFFY
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGADWKPKEYGLEGVIENLGLLSYEETGNLYRSCHVGLSMMMTKHPSY
LPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCIAETISEAIDKYDEFDVIRNNAINCIKDNHADWSVEIKKIH
DFIQSQ

Sequences:

>Translated_406_residues
MVKKIKLPKFLKDIIKKNIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTINWYVPPFENAFYGGVMTILR
TADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNSAEVIILNSIEAIQNIPASDFSIATLWTTAYVLLKVKNTGLK
FYFIQDFEPLFYPAGSTYAQAEATYRFGFYGIANTISLRKIYETEYTGIATHFTPCVDTKVFYPDSSLKKNSTPKRVFFY
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGADWKPKEYGLEGVIENLGLLSYEETGNLYRSCHVGLSMMMTKHPSY
LPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCIAETISEAIDKYDEFDVIRNNAINCIKDNHADWSVEIKKIH
DFIQSQ
>Mature_406_residues
MVKKIKLPKFLKDIIKKNIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTINWYVPPFENAFYGGVMTILR
TADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNSAEVIILNSIEAIQNIPASDFSIATLWTTAYVLLKVKNTGLK
FYFIQDFEPLFYPAGSTYAQAEATYRFGFYGIANTISLRKIYETEYTGIATHFTPCVDTKVFYPDSSLKKNSTPKRVFFY
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGADWKPKEYGLEGVIENLGLLSYEETGNLYRSCHVGLSMMMTKHPSY
LPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCIAETISEAIDKYDEFDVIRNNAINCIKDNHADWSVEIKKIH
DFIQSQ

Specific function: Involved in O-antigen biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00534 Glycos_transf_1; PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 46029; Mature: 46029

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKKIKLPKFLKDIIKKNIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTI
CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
NWYVPPFENAFYGGVMTILRTADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNSA
EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEHHHCCCCCCC
EVIILNSIEAIQNIPASDFSIATLWTTAYVLLKVKNTGLKFYFIQDFEPLFYPAGSTYAQ
CEEEEECHHHHHCCCCCCCCHHHHHHEEEEEEEEECCCEEEEEEECCCCEEECCCCCEEC
AEATYRFGFYGIANTISLRKIYETEYTGIATHFTPCVDTKVFYPDSSLKKNSTPKRVFFY
CCEEEEEEEEEHHHHHHHHHHHHCCCCCEEHCCCCCCCCEEECCCCCCCCCCCCCEEEEE
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGADWKPKEYGLEGVIENLGLLSYEETG
CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCHHHHHHHCCCEEEHHHC
NLYRSCHVGLSMMMTKHPSYLPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCI
CHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEECCCCCHHHHHHCCCCCEECCCCHHHH
AETISEAIDKYDEFDVIRNNAINCIKDNHADWSVEIKKIHDFIQSQ
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure
MVKKIKLPKFLKDIIKKNIIVDRYIRDATALAGIMDFSCADISEIQQHPERVNQSGSQTI
CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEE
NWYVPPFENAFYGGVMTILRTADYLHQHGKIKQRFLICGDSNAEVMLTKITNAFPNLNSA
EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEHHHCCCCCCC
EVIILNSIEAIQNIPASDFSIATLWTTAYVLLKVKNTGLKFYFIQDFEPLFYPAGSTYAQ
CEEEEECHHHHHCCCCCCCCHHHHHHEEEEEEEEECCCEEEEEEECCCCEEECCCCCEEC
AEATYRFGFYGIANTISLRKIYETEYTGIATHFTPCVDTKVFYPDSSLKKNSTPKRVFFY
CCEEEEEEEEEHHHHHHHHHHHHCCCCCEEHCCCCCCCCEEECCCCCCCCCCCCCEEEEE
GRPGHPRNGFELAVEAMRKLKTRYGSQIEILSAGADWKPKEYGLEGVIENLGLLSYEETG
CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCHHHHHHHCCCEEEHHHC
NLYRSCHVGLSMMMTKHPSYLPFEMMACGVLVVSNINSSTQWLLKDRENCLLSHPSASCI
CHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEECCCCCHHHHHHCCCCCEECCCCHHHH
AETISEAIDKYDEFDVIRNNAINCIKDNHADWSVEIKKIHDFIQSQ
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]