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The map label for this gene is rfbA [H]

Identifier: 75909552

GI number: 75909552

Start: 4163271

End: 4164077

Strand: Direct

Name: rfbA [H]

Synonym: Ava_3346

Alternate gene names: 75909552

Gene position: 4163271-4164077 (Clockwise)

Preceding gene: 75909551

Following gene: 75909553

Centisome position: 65.4

GC content: 40.4

Gene sequence:

>807_bases
ATGGCTCTTGTAATTAAAAATAATTCAAACTGGCTGCAAGTGCAGCGCTACTGGGAACTGCTGCGTGTTTTAGTGATGAG
GAATCTCAAAGTACGCTACCGAGGTTCCTTGTTAGGCGTATATTGGTCGTTACTAAACCCGTTGATTATGACGGGACTGT
ACAGCGCCATTTTTGGCACAACATTCGCTTCTTATTATGGCAATTCCATCCTGAACTATATATTGGCAGCATTTACAGGG
CTGGTGGTCATCAATTTTTTCTCTTCCTCCACATCCCAAGCCTTGTCCAGTGTAGTAGGCAACGGAGCATTGTTGAATAA
AATTCGCTTGCCTGTTAGTGTGTTTCCTGTATCAATGGTTGCGGCAAATATATTTCAGTTCACAGTCGGAGCCTTCCCTT
TGCTGGCAATAATTACATTCGTTAATTCTAAAAGTGTAATAAACGTTCTAGCACTATTGTTTCCCTGTCTGGCTTTAGCT
TTAGTTTCTACCGGGGTGGGATTTTTAGTTAGCGCCTTGTATGTCTTTTTTAGAGATTTACCTTACTTCTACGAGTTAGT
TGTATTTGTACTCTGGATTAGTAGCCCAGTATTTTACCCGGCCGCCATTGTGCCACCCCAAGTAAAACCATTTTTACTCT
TAAATCCACTATCGCCTATTATTGAAAGTTTACGTCAAATTACACTATCAGGAAATTTACCGGATTTAAGTTTAATTTGG
GGTGGTTTACTCGGTGGCATAATTATTTTGTCATTGGGATGGTTTTGTTTTCAGTTGTGGCGACATCAATTTATGGATCT
GCTGTAG

Upstream 100 bases:

>100_bases
AACAATATAAAATCTCAATACTCACCCTATGCAGAAAAATGCACTCTGATAGTATAAAATGCGCGAATAACTCGCTTGTG
GTCTGTGGTGGTGTTTGAAG

Downstream 100 bases:

>100_bases
ATGGAAGTAATTCGTCTGGATAAAGTTTCGCTATGGCGGCGAACCCAAGAAGAGTTTTCTTATGACCTCAAGAAAACTCT
CCTGTCTTTGATAGAAGGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MALVIKNNSNWLQVQRYWELLRVLVMRNLKVRYRGSLLGVYWSLLNPLIMTGLYSAIFGTTFASYYGNSILNYILAAFTG
LVVINFFSSSTSQALSSVVGNGALLNKIRLPVSVFPVSMVAANIFQFTVGAFPLLAIITFVNSKSVINVLALLFPCLALA
LVSTGVGFLVSALYVFFRDLPYFYELVVFVLWISSPVFYPAAIVPPQVKPFLLLNPLSPIIESLRQITLSGNLPDLSLIW
GGLLGGIIILSLGWFCFQLWRHQFMDLL

Sequences:

>Translated_268_residues
MALVIKNNSNWLQVQRYWELLRVLVMRNLKVRYRGSLLGVYWSLLNPLIMTGLYSAIFGTTFASYYGNSILNYILAAFTG
LVVINFFSSSTSQALSSVVGNGALLNKIRLPVSVFPVSMVAANIFQFTVGAFPLLAIITFVNSKSVINVLALLFPCLALA
LVSTGVGFLVSALYVFFRDLPYFYELVVFVLWISSPVFYPAAIVPPQVKPFLLLNPLSPIIESLRQITLSGNLPDLSLIW
GGLLGGIIILSLGWFCFQLWRHQFMDLL
>Mature_267_residues
ALVIKNNSNWLQVQRYWELLRVLVMRNLKVRYRGSLLGVYWSLLNPLIMTGLYSAIFGTTFASYYGNSILNYILAAFTGL
VVINFFSSSTSQALSSVVGNGALLNKIRLPVSVFPVSMVAANIFQFTVGAFPLLAIITFVNSKSVINVLALLFPCLALAL
VSTGVGFLVSALYVFFRDLPYFYELVVFVLWISSPVFYPAAIVPPQVKPFLLLNPLSPIIESLRQITLSGNLPDLSLIWG
GLLGGIIILSLGWFCFQLWRHQFMDLL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29818; Mature: 29687

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVIKNNSNWLQVQRYWELLRVLVMRNLKVRYRGSLLGVYWSLLNPLIMTGLYSAIFGT
CEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFASYYGNSILNYILAAFTGLVVINFFSSSTSQALSSVVGNGALLNKIRLPVSVFPVSMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH
AANIFQFTVGAFPLLAIITFVNSKSVINVLALLFPCLALALVSTGVGFLVSALYVFFRDL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
PYFYELVVFVLWISSPVFYPAAIVPPQVKPFLLLNPLSPIIESLRQITLSGNLPDLSLIW
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHH
GGLLGGIIILSLGWFCFQLWRHQFMDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALVIKNNSNWLQVQRYWELLRVLVMRNLKVRYRGSLLGVYWSLLNPLIMTGLYSAIFGT
EEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFASYYGNSILNYILAAFTGLVVINFFSSSTSQALSSVVGNGALLNKIRLPVSVFPVSMV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH
AANIFQFTVGAFPLLAIITFVNSKSVINVLALLFPCLALALVSTGVGFLVSALYVFFRDL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
PYFYELVVFVLWISSPVFYPAAIVPPQVKPFLLLNPLSPIIESLRQITLSGNLPDLSLIW
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHH
GGLLGGIIILSLGWFCFQLWRHQFMDLL
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]