Click here to switch to the map view.

The map label for this gene is 75909507

Identifier: 75909507

GI number: 75909507

Start: 4119130

End: 4119630

Strand: Direct

Name: 75909507

Synonym: Ava_3300

Alternate gene names: NA

Gene position: 4119130-4119630 (Clockwise)

Preceding gene: 75909506

Following gene: 75909508

Centisome position: 64.71

GC content: 45.51

Gene sequence:

>501_bases
ATGTCCGTGCGCCTATACATAGGCAATTTGCCAAAAGAAGAAATAGACCGTCAAGAATTGCAAGCGGTTTTTGCCGCAGA
AGGCGATGCTGTGACGACGAAACTCATCAAAGACCGCAAAACAGGCAAATGCCGTGGTTTTGGGTTTTTGACAGTAAACA
ACGATGAACAAGCTGACCAAATTATCGAAAAGTATAATGGTCAGATGTTCAAAGAAACGCCTATCAAGTTAGAAAAAGCT
TTACCACGAACCAAAGGTGATGAAGGTGAGGAGCAAGCAACTCCTAAACCAGCAACTACCTCTGGCGGTCATGCGGCTCC
TAATACAAACAAAGAAGGTAGTCGTCGTGACAAAGGCGCTAAGAAGTCTCGACGTGGCGGCGGTAATCGGGAAAATACCA
CCACAACCACTACTGATTCCGATGCTATTCGTCCAGATCCCCGTTGGGCTTCTGAATTAGAAAAGCTGAAGCAGATACTA
GCAGCTCAAGCCACAAATTAA

Upstream 100 bases:

>100_bases
ACGGCAGTCTTGGTCAATAACCCATAAAAGTCAAAGCCAAGCAATTGATTTGTTGCCTTGCCATGTTCACCATGTTCATT
TAACTCTGGAGGTATAGTTC

Downstream 100 bases:

>100_bases
GTGAGCATACTGAGAAATTAAAAATTAAAAGTCAGAATTTTTTTGATTTTTAATTTTTAATCGTTAGTAGATAACAATTA
ACTATCTCAATGGTTAAGTG

Product: RNA-binding region RNP-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSVRLYIGNLPKEEIDRQELQAVFAAEGDAVTTKLIKDRKTGKCRGFGFLTVNNDEQADQIIEKYNGQMFKETPIKLEKA
LPRTKGDEGEEQATPKPATTSGGHAAPNTNKEGSRRDKGAKKSRRGGGNRENTTTTTTDSDAIRPDPRWASELEKLKQIL
AAQATN

Sequences:

>Translated_166_residues
MSVRLYIGNLPKEEIDRQELQAVFAAEGDAVTTKLIKDRKTGKCRGFGFLTVNNDEQADQIIEKYNGQMFKETPIKLEKA
LPRTKGDEGEEQATPKPATTSGGHAAPNTNKEGSRRDKGAKKSRRGGGNRENTTTTTTDSDAIRPDPRWASELEKLKQIL
AAQATN
>Mature_165_residues
SVRLYIGNLPKEEIDRQELQAVFAAEGDAVTTKLIKDRKTGKCRGFGFLTVNNDEQADQIIEKYNGQMFKETPIKLEKAL
PRTKGDEGEEQATPKPATTSGGHAAPNTNKEGSRRDKGAKKSRRGGGNRENTTTTTTDSDAIRPDPRWASELEKLKQILA
AQATN

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18260; Mature: 18128

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRLYIGNLPKEEIDRQELQAVFAAEGDAVTTKLIKDRKTGKCRGFGFLTVNNDEQADQ
CEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHH
IIEKYNGQMFKETPIKLEKALPRTKGDEGEEQATPKPATTSGGHAAPNTNKEGSRRDKGA
HHHHHCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCH
KKSRRGGGNRENTTTTTTDSDAIRPDPRWASELEKLKQILAAQATN
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVRLYIGNLPKEEIDRQELQAVFAAEGDAVTTKLIKDRKTGKCRGFGFLTVNNDEQADQ
EEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCHHHHH
IIEKYNGQMFKETPIKLEKALPRTKGDEGEEQATPKPATTSGGHAAPNTNKEGSRRDKGA
HHHHHCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCH
KKSRRGGGNRENTTTTTTDSDAIRPDPRWASELEKLKQILAAQATN
HHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA