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The map label for this gene is yrrB [H]

Identifier: 75909502

GI number: 75909502

Start: 4110711

End: 4111646

Strand: Direct

Name: yrrB [H]

Synonym: Ava_3295

Alternate gene names: 75909502

Gene position: 4110711-4111646 (Clockwise)

Preceding gene: 75909498

Following gene: 75909503

Centisome position: 64.58

GC content: 39.64

Gene sequence:

>936_bases
ATGAGATTACCATTCTATAAATATCGCATAGTAGCGTTGCTGAGTTTGATATTACTAGGTGAATGCTTGACACCAGCCAA
CGCAACTATCCCCGCCATCCCCAAACTATTAGCACAATATAGTCTTCCTACAGCCCCAACCTTATTAAATCAGGGATTAC
AGGCAATTCAAGCTGGGAGAATCCAAGATGCGATCGCCGCTTTTCAATCAGCCATTCAGTTAGATCCTAACCTAGCCGCA
GCTCACTACAATCTGGGTTTAGCCCTGCGACAAACCGGACAATTACAGCCAGCCGCCGACGCATTTTATCGCGCTACTCA
AAGTGACCCCAATTTTGCTTTAGCCTTTGCTAATTTAGGCGGCTCATTATTAGAAGGTAATAATTTACAACAAGCAAACG
ACTATTTGCAACGTGCATTGGAATTAGAACCCAGGCTGGGTTTTGCACATTATAACTTGGGTTTGGTGAGGCAGCAGCAA
CAAAATTGGGAAGGAGCGATCGCCTCATTTCAAAAAGCAGTAGAATTGAGTAAAAATGCACCTGAGCCTCATTATTATCT
AGGACTTTGTTATTTACAATTAGGTAAATTAGATGAGGCAAAAAATGCTTTTAATCAAGCTATAAAAATCAACCCACGAT
ACTCCGAAGCTCATTATAATTTGGGCGTTATCTTATTTAATCAAGGCAACTCCCAAGAAGCATTAATAGCCTTTAGAAAT
TCGGCCGAAGCTAATCCTAATTATCCCAATGCTTATTACGGTGCAGGATTAGTTTTCACCCAATTAAATCAATATAGTGA
AGCGGCGAAAGTATTTAATCACGCCAGGAATTTATATAATACCCAAGGTAATCCTCAATGGGCAAAAAATTCTGAACAAT
TGTTACAACAAGTACAAAATTTAAATTCCGTACCACGCGGAGGTAATAATAATTAA

Upstream 100 bases:

>100_bases
AAACTTTAATGCAGAATCTAAAATTTTTGTTAAAACGTAATTTTGAATGTCAGTTTATTTGAAGTAAAGATAACGGAAAT
TGTTGTGAGTTAGCCCATCA

Downstream 100 bases:

>100_bases
CCTACGCTAAAAATAAAATATGGGGTGAAATAACTAATGTCGTCGCAAATTAACCCCTCTTGACATGAACAATAAAATAC
AAAAGCGTACCAAGAGTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRLPFYKYRIVALLSLILLGECLTPANATIPAIPKLLAQYSLPTAPTLLNQGLQAIQAGRIQDAIAAFQSAIQLDPNLAA
AHYNLGLALRQTGQLQPAADAFYRATQSDPNFALAFANLGGSLLEGNNLQQANDYLQRALELEPRLGFAHYNLGLVRQQQ
QNWEGAIASFQKAVELSKNAPEPHYYLGLCYLQLGKLDEAKNAFNQAIKINPRYSEAHYNLGVILFNQGNSQEALIAFRN
SAEANPNYPNAYYGAGLVFTQLNQYSEAAKVFNHARNLYNTQGNPQWAKNSEQLLQQVQNLNSVPRGGNNN

Sequences:

>Translated_311_residues
MRLPFYKYRIVALLSLILLGECLTPANATIPAIPKLLAQYSLPTAPTLLNQGLQAIQAGRIQDAIAAFQSAIQLDPNLAA
AHYNLGLALRQTGQLQPAADAFYRATQSDPNFALAFANLGGSLLEGNNLQQANDYLQRALELEPRLGFAHYNLGLVRQQQ
QNWEGAIASFQKAVELSKNAPEPHYYLGLCYLQLGKLDEAKNAFNQAIKINPRYSEAHYNLGVILFNQGNSQEALIAFRN
SAEANPNYPNAYYGAGLVFTQLNQYSEAAKVFNHARNLYNTQGNPQWAKNSEQLLQQVQNLNSVPRGGNNN
>Mature_311_residues
MRLPFYKYRIVALLSLILLGECLTPANATIPAIPKLLAQYSLPTAPTLLNQGLQAIQAGRIQDAIAAFQSAIQLDPNLAA
AHYNLGLALRQTGQLQPAADAFYRATQSDPNFALAFANLGGSLLEGNNLQQANDYLQRALELEPRLGFAHYNLGLVRQQQ
QNWEGAIASFQKAVELSKNAPEPHYYLGLCYLQLGKLDEAKNAFNQAIKINPRYSEAHYNLGVILFNQGNSQEALIAFRN
SAEANPNYPNAYYGAGLVFTQLNQYSEAAKVFNHARNLYNTQGNPQWAKNSEQLLQQVQNLNSVPRGGNNN

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307150, Length=233, Percent_Identity=30.9012875536481, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI32307148, Length=233, Percent_Identity=30.9012875536481, Blast_Score=109, Evalue=4e-24,
Organism=Homo sapiens, GI118766330, Length=219, Percent_Identity=31.0502283105023, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI118766328, Length=219, Percent_Identity=31.0502283105023, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI301336134, Length=208, Percent_Identity=26.4423076923077, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI167466177, Length=177, Percent_Identity=27.683615819209, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI83415184, Length=208, Percent_Identity=26.4423076923077, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI167466175, Length=177, Percent_Identity=27.683615819209, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI22749211, Length=211, Percent_Identity=25.5924170616114, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33188431, Length=233, Percent_Identity=24.8927038626609, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI33188427, Length=233, Percent_Identity=24.8927038626609, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI33188429, Length=233, Percent_Identity=24.8927038626609, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI170784867, Length=228, Percent_Identity=25.4385964912281, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI189011544, Length=239, Percent_Identity=23.4309623430962, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115532692, Length=251, Percent_Identity=25.4980079681275, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI115532690, Length=251, Percent_Identity=25.4980079681275, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI25147174, Length=169, Percent_Identity=27.2189349112426, Blast_Score=77, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6319589, Length=171, Percent_Identity=29.8245614035088, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI17647755, Length=196, Percent_Identity=31.1224489795918, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24585827, Length=196, Percent_Identity=31.1224489795918, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24585829, Length=196, Percent_Identity=31.1224489795918, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24647123, Length=211, Percent_Identity=29.8578199052133, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI161076610, Length=237, Percent_Identity=28.6919831223629, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19920486, Length=237, Percent_Identity=28.6919831223629, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24659892, Length=183, Percent_Identity=26.2295081967213, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 34305; Mature: 34305

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPFYKYRIVALLSLILLGECLTPANATIPAIPKLLAQYSLPTAPTLLNQGLQAIQAGR
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
IQDAIAAFQSAIQLDPNLAAAHYNLGLALRQTGQLQPAADAFYRATQSDPNFALAFANLG
HHHHHHHHHHHHHCCCCCEEHHHCCCCEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCC
GSLLEGNNLQQANDYLQRALELEPRLGFAHYNLGLVRQQQQNWEGAIASFQKAVELSKNA
CCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PEPHYYLGLCYLQLGKLDEAKNAFNQAIKINPRYSEAHYNLGVILFNQGNSQEALIAFRN
CCCCHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEC
SAEANPNYPNAYYGAGLVFTQLNQYSEAAKVFNHARNLYNTQGNPQWAKNSEQLLQQVQN
CCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LNSVPRGGNNN
HCCCCCCCCCC
>Mature Secondary Structure
MRLPFYKYRIVALLSLILLGECLTPANATIPAIPKLLAQYSLPTAPTLLNQGLQAIQAGR
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
IQDAIAAFQSAIQLDPNLAAAHYNLGLALRQTGQLQPAADAFYRATQSDPNFALAFANLG
HHHHHHHHHHHHHCCCCCEEHHHCCCCEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCC
GSLLEGNNLQQANDYLQRALELEPRLGFAHYNLGLVRQQQQNWEGAIASFQKAVELSKNA
CCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PEPHYYLGLCYLQLGKLDEAKNAFNQAIKINPRYSEAHYNLGVILFNQGNSQEALIAFRN
CCCCHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEC
SAEANPNYPNAYYGAGLVFTQLNQYSEAAKVFNHARNLYNTQGNPQWAKNSEQLLQQVQN
CCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LNSVPRGGNNN
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]