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The map label for this gene is cph2 [H]

Identifier: 75909377

GI number: 75909377

Start: 3935211

End: 3936245

Strand: Direct

Name: cph2 [H]

Synonym: Ava_3170

Alternate gene names: 75909377

Gene position: 3935211-3936245 (Clockwise)

Preceding gene: 75909375

Following gene: 75909379

Centisome position: 61.82

GC content: 41.55

Gene sequence:

>1035_bases
ATGTCAGGCATAAGCCCATATTCTCTTTCTAAAAAACCTCCCTTAATTTTGGTGGCTGATGATGACAAGACCATCCGAAT
GCTGTTGCGTGAAGCTATGGAAAAAGAAGGCTATCGAGTAGTAGAGGTCACAGATGGTAAACAGTGTCTAGACGCTTATG
AGGCTGTTAAACCAGATATAGTGTTGCTAGATGCTATGATGCCTGTAATGGACGGTTTTACGTGCTGTAAACAATTACTA
CAAATTGCCAGAAATAATCTAATTACCGCATTGGCAAATCTAGATACTGATTCCGGCTTAGGAAGTACGGTGATCTCCAG
ATTGTGGGAACGTACACCTATCCTGATGATCACTAGTTTAAACGATGCAGAGTCCGTAGATCGTGCTTTTGAAGCTGGCG
CAACTGACTATATTACTAAGCCAATTCACTGGGCTGTGTTGCGTCAACGCTTACGAAGATTACTACAGCAAGCACAAGTG
TATAAACAGTTAGAAGCTGCGAACATGGCCTTACAGCACTTAGCCAATGTGGATGGTTTAACTGGATTAGCTAATCGCCG
CCGCTTTGATAATTATTTAAATACGCAGTGGATTAACTTGGTACAGAAAGGCGCTCCCTTGTCTTTGATTTTGTGTGATA
TTGATTATTTTAAATTTTATAATGACCAGTACGGACATCCGGCTGGGGATATTTGTTTACAAAAAGTAGGTGCGGTTTTA
AGCTACAAAGCTCAGAAGCATCAGGATTTAGTTGCCCGTTATGGTGGCGAAGAATTTGCCGTGATTATGCCATATACTCA
TGCAAAAGGAGCGATTTATGTTGCCCATACCATACAAACCAGTGTCAGAGATTTGCAAATTACCCATGATAAATCTGCTG
TGAGTCAACATATTACTCTCAGTATGGGTGTTGCTACCATAACTCCTACCTGGGAATCTTCACCTTCTGATTTGATTGCG
GCGGCGGATAAAGCACTTTATAAAGCGAAGGAATCAGGACGAGACCGTATTTGTCAATGGAAAGGTAGTCAATAG

Upstream 100 bases:

>100_bases
ATTTTGCTGAAATTATGACTACAGGTAATTTAACTATGGAGGTGGAGCTTTTCTCTGTTTTTCAGTCCTCAGAACTCTGA
TTTTCTACGGAACGCATCTC

Downstream 100 bases:

>100_bases
TTTTCTTTTCCCCTTGCTCCCAGCCAATCCCTAGTCCCAATCTCTAAGATGGATAAACGGGCAGGGTGAAGTGGAACCAC
GCTCCACCGTGGGGGTTGGA

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MSGISPYSLSKKPPLILVADDDKTIRMLLREAMEKEGYRVVEVTDGKQCLDAYEAVKPDIVLLDAMMPVMDGFTCCKQLL
QIARNNLITALANLDTDSGLGSTVISRLWERTPILMITSLNDAESVDRAFEAGATDYITKPIHWAVLRQRLRRLLQQAQV
YKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKFYNDQYGHPAGDICLQKVGAVL
SYKAQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAHTIQTSVRDLQITHDKSAVSQHITLSMGVATITPTWESSPSDLIA
AADKALYKAKESGRDRICQWKGSQ

Sequences:

>Translated_344_residues
MSGISPYSLSKKPPLILVADDDKTIRMLLREAMEKEGYRVVEVTDGKQCLDAYEAVKPDIVLLDAMMPVMDGFTCCKQLL
QIARNNLITALANLDTDSGLGSTVISRLWERTPILMITSLNDAESVDRAFEAGATDYITKPIHWAVLRQRLRRLLQQAQV
YKQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKFYNDQYGHPAGDICLQKVGAVL
SYKAQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAHTIQTSVRDLQITHDKSAVSQHITLSMGVATITPTWESSPSDLIA
AADKALYKAKESGRDRICQWKGSQ
>Mature_343_residues
SGISPYSLSKKPPLILVADDDKTIRMLLREAMEKEGYRVVEVTDGKQCLDAYEAVKPDIVLLDAMMPVMDGFTCCKQLLQ
IARNNLITALANLDTDSGLGSTVISRLWERTPILMITSLNDAESVDRAFEAGATDYITKPIHWAVLRQRLRRLLQQAQVY
KQLEAANMALQHLANVDGLTGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKFYNDQYGHPAGDICLQKVGAVLS
YKAQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAHTIQTSVRDLQITHDKSAVSQHITLSMGVATITPTWESSPSDLIAA
ADKALYKAKESGRDRICQWKGSQ

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=204, Percent_Identity=31.3725490196078, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=199, Percent_Identity=31.6582914572864, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=38.3233532934132, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=32.5842696629214, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787816, Length=173, Percent_Identity=35.2601156069364, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=132, Percent_Identity=36.3636363636364, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=33.9285714285714, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=29.3103448275862, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=33.5260115606936, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=29.9435028248588, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=201, Percent_Identity=31.3432835820896, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=29.0502793296089, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788085, Length=180, Percent_Identity=27.2222222222222, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 38379; Mature: 38247

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGISPYSLSKKPPLILVADDDKTIRMLLREAMEKEGYRVVEVTDGKQCLDAYEAVKPDI
CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCE
VLLDAMMPVMDGFTCCKQLLQIARNNLITALANLDTDSGLGSTVISRLWERTPILMITSL
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEC
NDAESVDRAFEAGATDYITKPIHWAVLRQRLRRLLQQAQVYKQLEAANMALQHLANVDGL
CCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKFYNDQYGHPAGDICLQKVGAVL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHH
SYKAQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAHTIQTSVRDLQITHDKSAVSQHITL
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEHHHHHHHEEEECCHHHHHHHHEE
SMGVATITPTWESSPSDLIAAADKALYKAKESGRDRICQWKGSQ
EECCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SGISPYSLSKKPPLILVADDDKTIRMLLREAMEKEGYRVVEVTDGKQCLDAYEAVKPDI
CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCE
VLLDAMMPVMDGFTCCKQLLQIARNNLITALANLDTDSGLGSTVISRLWERTPILMITSL
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEC
NDAESVDRAFEAGATDYITKPIHWAVLRQRLRRLLQQAQVYKQLEAANMALQHLANVDGL
CCHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TGLANRRRFDNYLNTQWINLVQKGAPLSLILCDIDYFKFYNDQYGHPAGDICLQKVGAVL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHH
SYKAQKHQDLVARYGGEEFAVIMPYTHAKGAIYVAHTIQTSVRDLQITHDKSAVSQHITL
HHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEEHHHHHHHEEEECCHHHHHHHHEE
SMGVATITPTWESSPSDLIAAADKALYKAKESGRDRICQWKGSQ
EECCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]