| Definition | Anabaena variabilis ATCC 29413 chromosome, complete genome. |
|---|---|
| Accession | NC_007413 |
| Length | 6,365,727 |
Click here to switch to the map view.
The map label for this gene is 75909244
Identifier: 75909244
GI number: 75909244
Start: 3758292
End: 3760526
Strand: Direct
Name: 75909244
Synonym: Ava_3035
Alternate gene names: NA
Gene position: 3758292-3760526 (Clockwise)
Preceding gene: 75909243
Following gene: 75909245
Centisome position: 59.04
GC content: 45.37
Gene sequence:
>2235_bases ATGACTCATCCGCTATACGTTGCTTTTATTTGGCATCAACATCAGCCATTGTATAAATCTCCTGGTAGCAGCCTTTCCGT GCCTTCTAGTCAGCAATATCGCCTGCCTTGGGTGCGCTTACATGGTACAAAAGATTATTTAGATTTAATACTAATTTTGG AAAAGTATCCAAAATTACATCAAACAGTAAACTTAGTTCCTTCCTTAATTCTGCAACTGGAAGATTATATTGCTGGTACA GCGTTTGACCCTTACCTCAAAGCCAGTCTGACACCAACTGAGCAACTGACTCAGCAACAACGAGAGTTTATCATTCAGCA CTTTTTTGATGCTAATCACCACACCTTGATTGACCCTCACCCTCGTTACGCCGAGTTGTACTATCAAAGGCAGGAAAAAG GGCCGGCTTGGTGTTTGGCGAATTGGCAATTAGCAGATTACAGCGACTTGTTGGCGTGGCACAATTTGGCATGGATAGAC CCACTGTTTTGGGATGATCCAGAAATTGCGGCTTGGTTACAGCAGGGGCGTAACTTTACCTTAGGCGATCGCCAGCGCAT TTATTCCAAACAACGTGATATTCTCAGCCGCATTATTCCTCAGCACCGGAAAATGCAGGAATCTGGGCAATTAGAAGTTA CCACCACGCCCTACACTCACCCGATTTTGCCTTTGTTAGCTGACACTAATTCTGGTCGGGTGGCTGTGCCAAATATGGCA TTACCTGAGTCCCGGTTTCAGTGGTCAGAAGATATTCCTCGTCATTTGAGAAAAGCTTGGGAACTATATACAGAAAGATT TGGGCAGGAACCCAAGGGCTTATGGCCGTCCGAACAGTCAGTTAGTCCAGATATATTACCGTATATTATCAAACAAGGAT TTCAGTGGATTTGCTCAGATGAAGCAGTCTTAGGGTGGACACTGAAACACTTCTTTCATCGGGATGGGGCAGGGAATGTA CAGCAGCCAGAACTGTTATATCGACCTTATCGCCTAGCAACTCCAGCCGGAGATTTGGCAATTGTCTTCCGTGACCACAG ATTATCAGATTTAATAGGCTTTACCTATGGGGCAATGCCCGCCAAACAGGCAGCCGCTGACCTGGTGGGACACCTACAAG CGATCGCCAAAATGCAACGAGAACGGCCAAGCGAACAGCCTTGGTTAGTGACTATCGCCTTAGATGGCGAAAACTGCTGG GAATTTTACCCCCAAGATGGCAAACCATTCCTAGAAGCTTTATATCAAAGTTTAAGTAACGAATCCCATATCAAACTCGT TACCGTCTCCGAATTTATCGAGGAATTTCCCGCCACAGCCACTATTCCCGCAGAACAACTACATAGCGGTTCTTGGGTTG ATGGTAGCTTTACCACCTGGATTGGTGATCCTGCCAAAAACCGGGCTTGGGATTACCTCACCGAAGCGAGAATCATGTTG GCAAATCATCCCGAAGCAACAGAAGAAAATAACCCCGAAGCTTGGGAAGCTTTATATGCTGCCGAAGGTTCAGACTGGTT TTGGTGGTTTGGTGAAGGACATTCCTCAAATCAAGATGCCATTTTTGACCAATTGTTTCGAGAACATTTGTGTGGCATCT ATAAAGCTTTGAATGAACCCATACCCGCATATCTCAAGAATCCAGTGGAGGTTCATGCAGCCAGAGCAGATCATTCTCCT GAAGGCTTCATTCATCCTGTAATTGATGGCAGAGGAGATGAGCAAGATTGGGACAAAGCTGGACGGATAGAAATTGGTGG GGCGAGGGGGACAATGCACAACAGCAGCATAGTTCAGCGCCTATGGTATGGGGTAGATCACCTGAATTTCTATTTGCGAG TAGATTTTAAAAGCGGTGTTACCCCTGGACATGGTTTGCCCCCAGAGTTAAACCTGTTGTGGTTTTATCCAGATCGAACA ATGCACAATAGTCCGATTCCTTTAGCTGATGTGCCGGACACAGCCCCACTTAATTATCTATTCCATCATCATTTGGAAAT TAACTTGCTGACCCAATCAATTCAGTTTCGGGAAGCAGCAGAAAATTATCAATGGCATCCCCGTTTCAGCCGCGCTCAAG TCGCCTTAGAAAATTGTTTAGAAGTGGCGATACCCTGGGCAGATTTGCAAGTTCCGCCAGATTATCCTCTGCGGCTAATT CTAGTACTTGCTGATGAGGGACGTTTTAGTAAATATTTACCAGAAGATACTTTAATTCCGATTGAAGTGCCGTAA
Upstream 100 bases:
>100_bases CTGAGGATTAGGAAAGAGGCAATTTACCCAATCCCCAATACCCAATCCCCGATACCCAATACCCAATACCCAATCCCCAA CACCCAATCCCTAAGACCCT
Downstream 100 bases:
>100_bases GCAGCAATGGAGAGTCTAGTATGAAATTTTACAGGATTGGTATGTAAAGGTTAATAAAACTATGATGATATCCTGAGCTT TATGGTGATTACTCATAGCT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Amylopullulanase; Glycoside Hydrolase; Glycosy Hydrolase Family Protein; Pullulanase; Family; Glycosyl Hydrolase Family; Alpha-Amylase/Alpha-Mannosidase; Membrane Bound Alpha-Amylase; Pullulanase Glycoside Hydrolase Family; Alpha-Dextran Endo-1 6-Alpha-Glucosidase; Alpha-Mannosidase; Amylopullulanase Related Protein
Number of amino acids: Translated: 744; Mature: 743
Protein sequence:
>744_residues MTHPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLHQTVNLVPSLILQLEDYIAGT AFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPHPRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWID PLFWDDPEIAAWLQQGRNFTLGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSDEAVLGWTLKHFFHRDGAGNV QQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMPAKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCW EFYPQDGKPFLEALYQSLSNESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEPIPAYLKNPVEVHAARADHSP EGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQRLWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRT MHNSPIPLADVPDTAPLNYLFHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI LVLADEGRFSKYLPEDTLIPIEVP
Sequences:
>Translated_744_residues MTHPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLHQTVNLVPSLILQLEDYIAGT AFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPHPRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWID PLFWDDPEIAAWLQQGRNFTLGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSDEAVLGWTLKHFFHRDGAGNV QQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMPAKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCW EFYPQDGKPFLEALYQSLSNESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEPIPAYLKNPVEVHAARADHSP EGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQRLWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRT MHNSPIPLADVPDTAPLNYLFHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI LVLADEGRFSKYLPEDTLIPIEVP >Mature_743_residues THPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLHQTVNLVPSLILQLEDYIAGTA FDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPHPRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWIDP LFWDDPEIAAWLQQGRNFTLGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMAL PESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSDEAVLGWTLKHFFHRDGAGNVQ QPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMPAKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCWE FYPQDGKPFLEALYQSLSNESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIMLA NHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEPIPAYLKNPVEVHAARADHSPE GFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQRLWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRTM HNSPIPLADVPDTAPLNYLFHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLIL VLADEGRFSKYLPEDTLIPIEVP
Specific function: Unknown
COG id: COG1449
COG function: function code G; Alpha-amylase/alpha-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85720; Mature: 85588
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLH CCCCEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCHHHH QTVNLVPSLILQLEDYIAGTAFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPH HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCC PRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWIDPLFWDDPEIAAWLQQGRNFT CCHHHHHHHHHCCCCEEEEECCEECCHHHHHHHCCHHHCCCCCCCCHHHHHHHHCCCCCC LGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEEEECCCC LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSD CCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECC EAVLGWTLKHFFHRDGAGNVQQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMP CCHHHHHHHHHHHCCCCCCCCCCHHHHCCEEECCCCCCEEEEEECCCHHHHHHHHHCCCC AKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCWEFYPQDGKPFLEALYQSLSN HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHCC ESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML CCCEEEEEHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCEEEE ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEP ECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC IPAYLKNPVEVHAARADHSPEGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQR CHHHHCCCHHEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHH LWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRTMHNSPIPLADVPDTAPLNYL HHHCHHHEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH FHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI HHHEEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE LVLADEGRFSKYLPEDTLIPIEVP EEEECCCCCHHCCCCCCEEEEECC >Mature Secondary Structure THPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLH CCCEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCHHHH QTVNLVPSLILQLEDYIAGTAFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPH HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCC PRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWIDPLFWDDPEIAAWLQQGRNFT CCHHHHHHHHHCCCCEEEEECCEECCHHHHHHHCCHHHCCCCCCCCHHHHHHHHCCCCCC LGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEEEECCCC LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSD CCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECC EAVLGWTLKHFFHRDGAGNVQQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMP CCHHHHHHHHHHHCCCCCCCCCCHHHHCCEEECCCCCCEEEEEECCCHHHHHHHHHCCCC AKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCWEFYPQDGKPFLEALYQSLSN HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHCC ESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML CCCEEEEEHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCEEEE ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEP ECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC IPAYLKNPVEVHAARADHSPEGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQR CHHHHCCCHHEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHH LWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRTMHNSPIPLADVPDTAPLNYL HHHCHHHEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH FHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI HHHEEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE LVLADEGRFSKYLPEDTLIPIEVP EEEECCCCCHHCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA