Definition Anabaena variabilis ATCC 29413 chromosome, complete genome.
Accession NC_007413
Length 6,365,727

Click here to switch to the map view.

The map label for this gene is 75909244

Identifier: 75909244

GI number: 75909244

Start: 3758292

End: 3760526

Strand: Direct

Name: 75909244

Synonym: Ava_3035

Alternate gene names: NA

Gene position: 3758292-3760526 (Clockwise)

Preceding gene: 75909243

Following gene: 75909245

Centisome position: 59.04

GC content: 45.37

Gene sequence:

>2235_bases
ATGACTCATCCGCTATACGTTGCTTTTATTTGGCATCAACATCAGCCATTGTATAAATCTCCTGGTAGCAGCCTTTCCGT
GCCTTCTAGTCAGCAATATCGCCTGCCTTGGGTGCGCTTACATGGTACAAAAGATTATTTAGATTTAATACTAATTTTGG
AAAAGTATCCAAAATTACATCAAACAGTAAACTTAGTTCCTTCCTTAATTCTGCAACTGGAAGATTATATTGCTGGTACA
GCGTTTGACCCTTACCTCAAAGCCAGTCTGACACCAACTGAGCAACTGACTCAGCAACAACGAGAGTTTATCATTCAGCA
CTTTTTTGATGCTAATCACCACACCTTGATTGACCCTCACCCTCGTTACGCCGAGTTGTACTATCAAAGGCAGGAAAAAG
GGCCGGCTTGGTGTTTGGCGAATTGGCAATTAGCAGATTACAGCGACTTGTTGGCGTGGCACAATTTGGCATGGATAGAC
CCACTGTTTTGGGATGATCCAGAAATTGCGGCTTGGTTACAGCAGGGGCGTAACTTTACCTTAGGCGATCGCCAGCGCAT
TTATTCCAAACAACGTGATATTCTCAGCCGCATTATTCCTCAGCACCGGAAAATGCAGGAATCTGGGCAATTAGAAGTTA
CCACCACGCCCTACACTCACCCGATTTTGCCTTTGTTAGCTGACACTAATTCTGGTCGGGTGGCTGTGCCAAATATGGCA
TTACCTGAGTCCCGGTTTCAGTGGTCAGAAGATATTCCTCGTCATTTGAGAAAAGCTTGGGAACTATATACAGAAAGATT
TGGGCAGGAACCCAAGGGCTTATGGCCGTCCGAACAGTCAGTTAGTCCAGATATATTACCGTATATTATCAAACAAGGAT
TTCAGTGGATTTGCTCAGATGAAGCAGTCTTAGGGTGGACACTGAAACACTTCTTTCATCGGGATGGGGCAGGGAATGTA
CAGCAGCCAGAACTGTTATATCGACCTTATCGCCTAGCAACTCCAGCCGGAGATTTGGCAATTGTCTTCCGTGACCACAG
ATTATCAGATTTAATAGGCTTTACCTATGGGGCAATGCCCGCCAAACAGGCAGCCGCTGACCTGGTGGGACACCTACAAG
CGATCGCCAAAATGCAACGAGAACGGCCAAGCGAACAGCCTTGGTTAGTGACTATCGCCTTAGATGGCGAAAACTGCTGG
GAATTTTACCCCCAAGATGGCAAACCATTCCTAGAAGCTTTATATCAAAGTTTAAGTAACGAATCCCATATCAAACTCGT
TACCGTCTCCGAATTTATCGAGGAATTTCCCGCCACAGCCACTATTCCCGCAGAACAACTACATAGCGGTTCTTGGGTTG
ATGGTAGCTTTACCACCTGGATTGGTGATCCTGCCAAAAACCGGGCTTGGGATTACCTCACCGAAGCGAGAATCATGTTG
GCAAATCATCCCGAAGCAACAGAAGAAAATAACCCCGAAGCTTGGGAAGCTTTATATGCTGCCGAAGGTTCAGACTGGTT
TTGGTGGTTTGGTGAAGGACATTCCTCAAATCAAGATGCCATTTTTGACCAATTGTTTCGAGAACATTTGTGTGGCATCT
ATAAAGCTTTGAATGAACCCATACCCGCATATCTCAAGAATCCAGTGGAGGTTCATGCAGCCAGAGCAGATCATTCTCCT
GAAGGCTTCATTCATCCTGTAATTGATGGCAGAGGAGATGAGCAAGATTGGGACAAAGCTGGACGGATAGAAATTGGTGG
GGCGAGGGGGACAATGCACAACAGCAGCATAGTTCAGCGCCTATGGTATGGGGTAGATCACCTGAATTTCTATTTGCGAG
TAGATTTTAAAAGCGGTGTTACCCCTGGACATGGTTTGCCCCCAGAGTTAAACCTGTTGTGGTTTTATCCAGATCGAACA
ATGCACAATAGTCCGATTCCTTTAGCTGATGTGCCGGACACAGCCCCACTTAATTATCTATTCCATCATCATTTGGAAAT
TAACTTGCTGACCCAATCAATTCAGTTTCGGGAAGCAGCAGAAAATTATCAATGGCATCCCCGTTTCAGCCGCGCTCAAG
TCGCCTTAGAAAATTGTTTAGAAGTGGCGATACCCTGGGCAGATTTGCAAGTTCCGCCAGATTATCCTCTGCGGCTAATT
CTAGTACTTGCTGATGAGGGACGTTTTAGTAAATATTTACCAGAAGATACTTTAATTCCGATTGAAGTGCCGTAA

Upstream 100 bases:

>100_bases
CTGAGGATTAGGAAAGAGGCAATTTACCCAATCCCCAATACCCAATCCCCGATACCCAATACCCAATACCCAATCCCCAA
CACCCAATCCCTAAGACCCT

Downstream 100 bases:

>100_bases
GCAGCAATGGAGAGTCTAGTATGAAATTTTACAGGATTGGTATGTAAAGGTTAATAAAACTATGATGATATCCTGAGCTT
TATGGTGATTACTCATAGCT

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Glycoside Hydrolase Family Protein; Amylopullulanase; Glycoside Hydrolase; Glycosy Hydrolase Family Protein; Pullulanase; Family; Glycosyl Hydrolase Family; Alpha-Amylase/Alpha-Mannosidase; Membrane Bound Alpha-Amylase; Pullulanase Glycoside Hydrolase Family; Alpha-Dextran Endo-1 6-Alpha-Glucosidase; Alpha-Mannosidase; Amylopullulanase Related Protein

Number of amino acids: Translated: 744; Mature: 743

Protein sequence:

>744_residues
MTHPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLHQTVNLVPSLILQLEDYIAGT
AFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPHPRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWID
PLFWDDPEIAAWLQQGRNFTLGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA
LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSDEAVLGWTLKHFFHRDGAGNV
QQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMPAKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCW
EFYPQDGKPFLEALYQSLSNESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML
ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEPIPAYLKNPVEVHAARADHSP
EGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQRLWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRT
MHNSPIPLADVPDTAPLNYLFHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI
LVLADEGRFSKYLPEDTLIPIEVP

Sequences:

>Translated_744_residues
MTHPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLHQTVNLVPSLILQLEDYIAGT
AFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPHPRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWID
PLFWDDPEIAAWLQQGRNFTLGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA
LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSDEAVLGWTLKHFFHRDGAGNV
QQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMPAKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCW
EFYPQDGKPFLEALYQSLSNESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML
ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEPIPAYLKNPVEVHAARADHSP
EGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQRLWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRT
MHNSPIPLADVPDTAPLNYLFHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI
LVLADEGRFSKYLPEDTLIPIEVP
>Mature_743_residues
THPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLHQTVNLVPSLILQLEDYIAGTA
FDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPHPRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWIDP
LFWDDPEIAAWLQQGRNFTLGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMAL
PESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSDEAVLGWTLKHFFHRDGAGNVQ
QPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMPAKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCWE
FYPQDGKPFLEALYQSLSNESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIMLA
NHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEPIPAYLKNPVEVHAARADHSPE
GFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQRLWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRTM
HNSPIPLADVPDTAPLNYLFHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLIL
VLADEGRFSKYLPEDTLIPIEVP

Specific function: Unknown

COG id: COG1449

COG function: function code G; Alpha-amylase/alpha-mannosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85720; Mature: 85588

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLH
CCCCEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCHHHH
QTVNLVPSLILQLEDYIAGTAFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPH
HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCC
PRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWIDPLFWDDPEIAAWLQQGRNFT
CCHHHHHHHHHCCCCEEEEECCEECCHHHHHHHCCHHHCCCCCCCCHHHHHHHHCCCCCC
LGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEEEECCCC
LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSD
CCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECC
EAVLGWTLKHFFHRDGAGNVQQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMP
CCHHHHHHHHHHHCCCCCCCCCCHHHHCCEEECCCCCCEEEEEECCCHHHHHHHHHCCCC
AKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCWEFYPQDGKPFLEALYQSLSN
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHCC
ESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML
CCCEEEEEHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCEEEE
ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEP
ECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
IPAYLKNPVEVHAARADHSPEGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQR
CHHHHCCCHHEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHH
LWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRTMHNSPIPLADVPDTAPLNYL
HHHCHHHEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
FHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI
HHHEEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
LVLADEGRFSKYLPEDTLIPIEVP
EEEECCCCCHHCCCCCCEEEEECC
>Mature Secondary Structure 
THPLYVAFIWHQHQPLYKSPGSSLSVPSSQQYRLPWVRLHGTKDYLDLILILEKYPKLH
CCCEEEEEEEECCCCHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCHHHH
QTVNLVPSLILQLEDYIAGTAFDPYLKASLTPTEQLTQQQREFIIQHFFDANHHTLIDPH
HHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCC
PRYAELYYQRQEKGPAWCLANWQLADYSDLLAWHNLAWIDPLFWDDPEIAAWLQQGRNFT
CCHHHHHHHHHCCCCEEEEECCEECCHHHHHHHCCHHHCCCCCCCCHHHHHHHHCCCCCC
LGDRQRIYSKQRDILSRIIPQHRKMQESGQLEVTTTPYTHPILPLLADTNSGRVAVPNMA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCEEEECCCC
LPESRFQWSEDIPRHLRKAWELYTERFGQEPKGLWPSEQSVSPDILPYIIKQGFQWICSD
CCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECC
EAVLGWTLKHFFHRDGAGNVQQPELLYRPYRLATPAGDLAIVFRDHRLSDLIGFTYGAMP
CCHHHHHHHHHHHCCCCCCCCCCHHHHCCEEECCCCCCEEEEEECCCHHHHHHHHHCCCC
AKQAAADLVGHLQAIAKMQRERPSEQPWLVTIALDGENCWEFYPQDGKPFLEALYQSLSN
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHCCCCCCCHHHHHHHHHHCC
ESHIKLVTVSEFIEEFPATATIPAEQLHSGSWVDGSFTTWIGDPAKNRAWDYLTEARIML
CCCEEEEEHHHHHHHCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHCEEEE
ANHPEATEENNPEAWEALYAAEGSDWFWWFGEGHSSNQDAIFDQLFREHLCGIYKALNEP
ECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
IPAYLKNPVEVHAARADHSPEGFIHPVIDGRGDEQDWDKAGRIEIGGARGTMHNSSIVQR
CHHHHCCCHHEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHH
LWYGVDHLNFYLRVDFKSGVTPGHGLPPELNLLWFYPDRTMHNSPIPLADVPDTAPLNYL
HHHCHHHEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHH
FHHHLEINLLTQSIQFREAAENYQWHPRFSRAQVALENCLEVAIPWADLQVPPDYPLRLI
HHHEEEEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
LVLADEGRFSKYLPEDTLIPIEVP
EEEECCCCCHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA