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The map label for this gene is pecB [H]

Identifier: 75909135

GI number: 75909135

Start: 3632020

End: 3632538

Strand: Direct

Name: pecB [H]

Synonym: Ava_2925

Alternate gene names: 75909135

Gene position: 3632020-3632538 (Clockwise)

Preceding gene: 75909134

Following gene: 75909136

Centisome position: 57.06

GC content: 40.46

Gene sequence:

>519_bases
ATGCTTGATGCTTTTTCCAAAGTAGTTGAACAGGCAGATAGAAAAGGTAATTATCTCAGTGTAGATGAAATCAACGCATT
ATCGGCATTAGTTACTGATAGTAATAAGCGGTTAGATATAGTTAACAGACTAACAAGTAATGCTTCCTCCATTGTGGCTA
ATGCTTATCGTGCTTTAGTTGCTGAGCGTCCACAAATATTTAATGCTGGTGGTGCTTGTTTCCACAACCGTAACCAAGCT
GCTTGTATCCGTGATTTAGGATTTATTCTGCGTTACGTCACCTATTCTGTATTAGCAGGTGATGCTAGTGTCATGGACGA
TCGCTGCTTAAATGGTCTGCGGGAAACATATCAAGCTTTGGGTACTCCTGGCGATGCAGTAGCATCTGGAATCCAAAAAA
TGAAAGATGCTGCAATTGCAATTGCCAATGACTCTAAAGGCATTACTAAAGGGGATTGTAGTCAGTTAATTGCTGAATTA
GCTAGCTATTTTGATCGCGCTGCTTCTGCGGTTGTTTAA

Upstream 100 bases:

>100_bases
AATGGGGGTGGATGCTGCTGAAAAATTTGTTTTCTAAATAGCAATAATAATTGCTGTCAACCTTATAACAAGCTGCAATG
AACTTTAGGAGGAAAGAAAG

Downstream 100 bases:

>100_bases
TTAGATTTTTTTCCAAAACTTTTTTCAAACTGACTGTTAGTAATTAATCACAGATCAAGGAGATTAGGAGAAGTATGAAA
ACACCTTTGACCGAAGCGAT

Product: phycobilisome protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MLDAFSKVVEQADRKGNYLSVDEINALSALVTDSNKRLDIVNRLTSNASSIVANAYRALVAERPQIFNAGGACFHNRNQA
ACIRDLGFILRYVTYSVLAGDASVMDDRCLNGLRETYQALGTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAEL
ASYFDRAASAVV

Sequences:

>Translated_172_residues
MLDAFSKVVEQADRKGNYLSVDEINALSALVTDSNKRLDIVNRLTSNASSIVANAYRALVAERPQIFNAGGACFHNRNQA
ACIRDLGFILRYVTYSVLAGDASVMDDRCLNGLRETYQALGTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAEL
ASYFDRAASAVV
>Mature_172_residues
MLDAFSKVVEQADRKGNYLSVDEINALSALVTDSNKRLDIVNRLTSNASSIVANAYRALVAERPQIFNAGGACFHNRNQA
ACIRDLGFILRYVTYSVLAGDASVMDDRCLNGLRETYQALGTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAEL
ASYFDRAASAVV

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the periphery of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18370; Mature: 18370

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDAFSKVVEQADRKGNYLSVDEINALSALVTDSNKRLDIVNRLTSNASSIVANAYRALV
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
AERPQIFNAGGACFHNRNQAACIRDLGFILRYVTYSVLAGDASVMDDRCLNGLRETYQAL
HCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAELASYFDRAASAVV
CCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDAFSKVVEQADRKGNYLSVDEINALSALVTDSNKRLDIVNRLTSNASSIVANAYRALV
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
AERPQIFNAGGACFHNRNQAACIRDLGFILRYVTYSVLAGDASVMDDRCLNGLRETYQAL
HCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
GTPGDAVASGIQKMKDAAIAIANDSKGITKGDCSQLIAELASYFDRAASAVV
CCCHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1556083; 11759840 [H]