| Definition | Anabaena variabilis ATCC 29413 chromosome, complete genome. |
|---|---|
| Accession | NC_007413 |
| Length | 6,365,727 |
Click here to switch to the map view.
The map label for this gene is rhtA [H]
Identifier: 75909052
GI number: 75909052
Start: 3518094
End: 3520643
Strand: Direct
Name: rhtA [H]
Synonym: Ava_2840
Alternate gene names: 75909052
Gene position: 3518094-3520643 (Clockwise)
Preceding gene: 75909039
Following gene: 75909053
Centisome position: 55.27
GC content: 44.43
Gene sequence:
>2550_bases ATGAAACCCGGAAAAATACTTTTTCTTCTCTTGCTCACAGGTTCTGTTTGGTCATTAATCAACCATCCTGCAAATAGTCA GGAAGCTCCATCCCCAACACCACTCAATACACAATCACCAGTACCTAACGCTCAGGAATTGACGCAAGTAACTGGTGTGA GAGTTGTTCCGACAGCTCAAGGTCTAGAGGTGATATTAGATAGTACAGCCGCCGAAAAATTGCAGGTATCAACGCAAAAT CAAGGCAATAGTTTGATTGCTGATATCACTAACGCTCAACTCAATTTGTCTGGGGAAAACACATTCAGCCAAAATAACCC AGTCACAGGCGTAACTACTGTGACTGTGGTTAATCAAAATGACAATACAATCCGGGTGACTGTGACTGGAGAGAAAAGCC TTCCCAAATTTGAGCTATTTGATAGTGATACAGGTTTAATTTTGGCATTCACCGCAACTGAAGTAGCTCAAGATTCCCCC GCCGAAGCGGATGAACCAATTGAACTGGTGGTGACAGCAACGCGTACCGAAACACCTATACAAAATGTCCCACGTTCCAT CACTGTTATTGACCGCGAACAAATCGCCGCACAAGCCAGCACTTCTCGTAACCTCATAGAAATTCTGGGGAAAACAGTTC CTGGTTTAGCACCACCAGCCCAAGGCGCTAGTAATTTTGGTCTAACTCTCAGAGGAAGGAATCCCCAGGTTTTGATTGAT GGAGTTCCCCAATCGACAACGAGAAATGCGTCGCGGGATTTGCGGACAATTGACTCGGCGGCGATTGAACGAATTGAAGT AGTACGCGGCCCCAGCGCAATTTATGGTGATGGTGCAACAGGGGGTGTGATTAATATCATCACCAGGCGACCGACTGAAG AAAAATTAACCTCCCGGACAGAAGTTGGTGTGAGTGCAGCTTTAGGTAATTTGTCAGGGGACAGTTTTAGCACCAACCTA CAGCATTTCATCTCGGCGAAACAAGATAACTTTGATTTTACCTTTAACTTTGCAGTAGCTAAAACTGGTGGCTTCTTTGA TGCTCAAGGCGATCGCATTCCCTCTGATCCTAATGCCCAAGGAGGCTTTTCTGATGCTTCGAGTATCAACTTATTTGGTA AGTTTGGTGTTGATATAGATACAAATCAACGTCTCCAACTCACCTTTAATCGCTTCGACGAAAAACAAGATACAGATATC GCTAGTGACCCCAGCGTCAATACTATCCCAGGTAGACAAAAAGCTCGTGCTTTAGAAGGGTTGAGTTTAGATGAAAGGCC AGGGAATGAGAACACATTCATCAACCTGCAATACACCCATGACGACTTATTCAATAGCAAACTACAAGCCCAGTTATATT ACCGAGATTACCTGACGCGCTTTTTTCCCTTTGATGGGCGTAGCTTTGCTAGTTTGGGTAACGAAATCTTTCAATCGCGG GTGGAGTCAGAAAAGTATGGGGGACGCTTGCAGATAGAAACACCTTTATTTAATCAAGGTGCAGCCAAACTACTTTGGGG TGTAGATTATTCCCACGAAGATACCTCTCAACCTGTATCTGTATTTGATCAAACTGCGTTTGTCGCCAGTGGGGGGTTAG CATTTCGGAAAACAGGCGATCGCTCCTGGACTCCTCCTTTAGAATTAAGGAGTCTGGGATTATTTGCTCAATTGAATTGG GAAATAAGCGATCGCTTCGTCTTCAATGGTGGTGTACGCTACGAAAACGCTGATGTGAGTGTCAATGATTTCCGCACCCT AGCTAATCCCAACGTTACTATTGGCGGCGGTGATTTGAACTTTAACGCCACACTGTTCAATTTGGGCGCAGTATACGCCC TCAATCCCCAACTGAGTGTATTTGCTAACTATGCTCAAGGTTTCTCCTTATCAGATATTGGGTTAGCACTCCGCAACGCC CCACCAGGCTTTTCTGTAGAATCCCTCAATCCCGAACCGCAAAAAGTAGATAACTATGAAATTGGCATTCGTGGACAATG GGACACTATACAAGCATCACTTTCGGCTTTTTACAACGAGTCTGACTTAGGTACAACTTTCACAGCACCAGGGACTGTCA TCCGCGCCCCAGAAAGAATCTATGGTCTAGAAGCAGCCATTGACGCACAACCTAGTTCTACATGGCAAGTTGGCGGGACA TTTACTCTTATTGGTGGGGAAATTGACAGCAATAATGATGGCGATTACGAATCATTAGATGGGTTTAGGATTCCCCCTTT GAAACTTACAGCCTATGTAGAGAATGAGACCTTACCCGGTTGGCGCAATCGTCTGCAAGCTTTGTACTCTGGTAATAGAG AAGTCTTTGGTAATAACAATACGGCCTTTGGTAGGAGACCTGTAGAGAGTTATTTTACTGTAGACTACATCAGTAGCATT AAACTCGGCGCAGGAACATTACAACTGGGATTAGAAAACCTCTTTAATAGTCAATATTTCCCTGTAGCTTCCCAATTGCA AGCCAATGATAGCGCTTATGCTGCTGCTAGAGGTAGGACTTTGAGTATTAAGTATTCTTTTGATTGGTAA
Upstream 100 bases:
>100_bases AATAAAATCAAGAACTATTGCTAATGCAAGTCAATAATAACTGGCGATGGATTGTGTCACTAGCCATAATCCAGTCGCAA CTTTTAGGTGTGAAGTGAAA
Downstream 100 bases:
>100_bases ATTCTTTTCTTGATCAAGAGACTGAGGGAGTCGGAAAACTTGCGAATCTGCACTCCCAAATAAAAACCCCACGGGTGCAG TGTGGGGTTTATAAAGTTAG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: TonB-dependent siderophore receptor rhtA [H]
Number of amino acids: Translated: 849; Mature: 849
Protein sequence:
>849_residues MKPGKILFLLLLTGSVWSLINHPANSQEAPSPTPLNTQSPVPNAQELTQVTGVRVVPTAQGLEVILDSTAAEKLQVSTQN QGNSLIADITNAQLNLSGENTFSQNNPVTGVTTVTVVNQNDNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSP AEADEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQGASNFGLTLRGRNPQVLID GVPQSTTRNASRDLRTIDSAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRTEVGVSAALGNLSGDSFSTNL QHFISAKQDNFDFTFNFAVAKTGGFFDAQGDRIPSDPNAQGGFSDASSINLFGKFGVDIDTNQRLQLTFNRFDEKQDTDI ASDPSVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFFPFDGRSFASLGNEIFQSR VESEKYGGRLQIETPLFNQGAAKLLWGVDYSHEDTSQPVSVFDQTAFVASGGLAFRKTGDRSWTPPLELRSLGLFAQLNW EISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLNFNATLFNLGAVYALNPQLSVFANYAQGFSLSDIGLALRNA PPGFSVESLNPEPQKVDNYEIGIRGQWDTIQASLSAFYNESDLGTTFTAPGTVIRAPERIYGLEAAIDAQPSSTWQVGGT FTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNNTAFGRRPVESYFTVDYISSI KLGAGTLQLGLENLFNSQYFPVASQLQANDSAYAAARGRTLSIKYSFDW
Sequences:
>Translated_849_residues MKPGKILFLLLLTGSVWSLINHPANSQEAPSPTPLNTQSPVPNAQELTQVTGVRVVPTAQGLEVILDSTAAEKLQVSTQN QGNSLIADITNAQLNLSGENTFSQNNPVTGVTTVTVVNQNDNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSP AEADEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQGASNFGLTLRGRNPQVLID GVPQSTTRNASRDLRTIDSAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRTEVGVSAALGNLSGDSFSTNL QHFISAKQDNFDFTFNFAVAKTGGFFDAQGDRIPSDPNAQGGFSDASSINLFGKFGVDIDTNQRLQLTFNRFDEKQDTDI ASDPSVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFFPFDGRSFASLGNEIFQSR VESEKYGGRLQIETPLFNQGAAKLLWGVDYSHEDTSQPVSVFDQTAFVASGGLAFRKTGDRSWTPPLELRSLGLFAQLNW EISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLNFNATLFNLGAVYALNPQLSVFANYAQGFSLSDIGLALRNA PPGFSVESLNPEPQKVDNYEIGIRGQWDTIQASLSAFYNESDLGTTFTAPGTVIRAPERIYGLEAAIDAQPSSTWQVGGT FTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNNTAFGRRPVESYFTVDYISSI KLGAGTLQLGLENLFNSQYFPVASQLQANDSAYAAARGRTLSIKYSFDW >Mature_849_residues MKPGKILFLLLLTGSVWSLINHPANSQEAPSPTPLNTQSPVPNAQELTQVTGVRVVPTAQGLEVILDSTAAEKLQVSTQN QGNSLIADITNAQLNLSGENTFSQNNPVTGVTTVTVVNQNDNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSP AEADEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQGASNFGLTLRGRNPQVLID GVPQSTTRNASRDLRTIDSAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRTEVGVSAALGNLSGDSFSTNL QHFISAKQDNFDFTFNFAVAKTGGFFDAQGDRIPSDPNAQGGFSDASSINLFGKFGVDIDTNQRLQLTFNRFDEKQDTDI ASDPSVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFFPFDGRSFASLGNEIFQSR VESEKYGGRLQIETPLFNQGAAKLLWGVDYSHEDTSQPVSVFDQTAFVASGGLAFRKTGDRSWTPPLELRSLGLFAQLNW EISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLNFNATLFNLGAVYALNPQLSVFANYAQGFSLSDIGLALRNA PPGFSVESLNPEPQKVDNYEIGIRGQWDTIQASLSAFYNESDLGTTFTAPGTVIRAPERIYGLEAAIDAQPSSTWQVGGT FTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNNTAFGRRPVESYFTVDYISSI KLGAGTLQLGLENLFNSQYFPVASQLQANDSAYAAARGRTLSIKYSFDW
Specific function: Receptor for the siderophore rhizobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=152, Percent_Identity=38.1578947368421, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1786344, Length=134, Percent_Identity=35.8208955223881, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1790405, Length=151, Percent_Identity=39.7350993377483, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1786798, Length=226, Percent_Identity=28.3185840707965, Blast_Score=66, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 92329; Mature: 92329
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.1 %Met (Translated Protein) 0.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.1 %Met (Mature Protein) 0.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPGKILFLLLLTGSVWSLINHPANSQEAPSPTPLNTQSPVPNAQELTQVTGVRVVPTAQ CCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCC GLEVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSGENTFSQNNPVTGVTTVTVVNQN CCEEEECCCCHHEEEEECCCCCCEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEEECC DNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSPAEADEPIELVVTATRTETPI CCEEEEEEECCCCCCCEEEECCCCCEEEEEEEHHHCCCCCCCCCCCEEEEEEECCCCCCH QNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQGASNFGLTLRGRNPQVLID HHCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEE GVPQSTTRNASRDLRTIDSAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRT CCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEECCCCCCCEEEEEECCCCHHHHHHHH EVGVSAALGNLSGDSFSTNLQHFISAKQDNFDFTFNFAVAKTGGFFDAQGDRIPSDPNAQ HCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCEECCCCCCCCCCCCCC GGFSDASSINLFGKFGVDIDTNQRLQLTFNRFDEKQDTDIASDPSVNTIPGRQKARALEG CCCCCCCCEEEEEEECCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCC LSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFFPFDGRSFASLGNEIFQSR CCCCCCCCCCCCEEEEEECCCHHCCCHHHEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VESEKYGGRLQIETPLFNQGAAKLLWGVDYSHEDTSQPVSVFDQTAFVASGGLAFRKTGD HHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCEEECCCEEEEECCC RSWTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLN CCCCCCHHHHHCCEEEEEEEEEEEEEEEECCEEEECCCCCHHHHHHHCCCCEEEECCCCE FNATLFNLGAVYALNPQLSVFANYAQGFSLSDIGLALRNAPPGFSVESLNPEPQKVDNYE EEEEEEECCEEEEECCCCEEHHHHHCCCCCHHHHHEEECCCCCCEECCCCCCCCCCCCEE IGIRGQWDTIQASLSAFYNESDLGTTFTAPGTVIRAPERIYGLEAAIDAQPSSTWQVGGT EEEECCHHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHCCCEEEECCCCCCCEECCCE FTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNN EEEEECEECCCCCCCHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC TAFGRRPVESYFTVDYISSIKLGAGTLQLGLENLFNSQYFPVASQLQANDSAYAAARGRT CCCCCCCHHHHEEEEHHHHEECCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEECCCE LSIKYSFDW EEEEEECCC >Mature Secondary Structure MKPGKILFLLLLTGSVWSLINHPANSQEAPSPTPLNTQSPVPNAQELTQVTGVRVVPTAQ CCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCC GLEVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSGENTFSQNNPVTGVTTVTVVNQN CCEEEECCCCHHEEEEECCCCCCEEEEEECCCEEEECCCCCCCCCCCCCEEEEEEEEECC DNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSPAEADEPIELVVTATRTETPI CCEEEEEEECCCCCCCEEEECCCCCEEEEEEEHHHCCCCCCCCCCCEEEEEEECCCCCCH QNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQGASNFGLTLRGRNPQVLID HHCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEE GVPQSTTRNASRDLRTIDSAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRT CCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEECCCCCCCEEEEEECCCCHHHHHHHH EVGVSAALGNLSGDSFSTNLQHFISAKQDNFDFTFNFAVAKTGGFFDAQGDRIPSDPNAQ HCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCEECCCCCCCCCCCCCC GGFSDASSINLFGKFGVDIDTNQRLQLTFNRFDEKQDTDIASDPSVNTIPGRQKARALEG CCCCCCCCEEEEEEECCEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCC LSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFFPFDGRSFASLGNEIFQSR CCCCCCCCCCCCEEEEEECCCHHCCCHHHEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHH VESEKYGGRLQIETPLFNQGAAKLLWGVDYSHEDTSQPVSVFDQTAFVASGGLAFRKTGD HHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHCCCEEECCCEEEEECCC RSWTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLN CCCCCCHHHHHCCEEEEEEEEEEEEEEEECCEEEECCCCCHHHHHHHCCCCEEEECCCCE FNATLFNLGAVYALNPQLSVFANYAQGFSLSDIGLALRNAPPGFSVESLNPEPQKVDNYE EEEEEEECCEEEEECCCCEEHHHHHCCCCCHHHHHEEECCCCCCEECCCCCCCCCCCCEE IGIRGQWDTIQASLSAFYNESDLGTTFTAPGTVIRAPERIYGLEAAIDAQPSSTWQVGGT EEEECCHHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHCCCEEEECCCCCCCEECCCE FTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNN EEEEECEECCCCCCCHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCC TAFGRRPVESYFTVDYISSIKLGAGTLQLGLENLFNSQYFPVASQLQANDSAYAAARGRT CCCCCCCHHHHEEEEHHHHEECCCCHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEECCCE LSIKYSFDW EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]