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The map label for this gene is rbfA

Identifier: 75908877

GI number: 75908877

Start: 3295640

End: 3296041

Strand: Direct

Name: rbfA

Synonym: Ava_2665

Alternate gene names: 75908877

Gene position: 3295640-3296041 (Clockwise)

Preceding gene: 75908876

Following gene: 75908878

Centisome position: 51.77

GC content: 44.78

Gene sequence:

>402_bases
ATGGCTACAAATCGCCGCGTCTCCCGTGTTGCTGAATTGATCAAACGGGAAGTTAGCCAAATGCTAATTAACGGTATTAA
AGATGATCGTGTGGGTACAGGCATGGTCAGTGTCACAGACGTAGATGTTTCTGGGGATCTGCAACACGCCAAAATCTATG
TCAGTATATATGGTACAGAAGAAGCTAAGGCAGAAACAATGGCGGGGTTGAAATCAGCCACAGGTTTTGTCCGTAGTGAA
TTAGGGGCAAGGGTAAGGTTACGTCGCACTCCCGAAGTGACTTTCATCGAAGATCGTTCAATAGAACGAGGAACAAAAGT
GCTAACTTTGCTGAATAAACTGGAGAATGCGCGATCGCTTGATGATATACCTTCAGCAGATGACTCTTTAGACGAAGATT
AG

Upstream 100 bases:

>100_bases
TGTCGGCAGGTTTTTCTAGAGGGTATTCCCCATAGTTTTGCTGTCCTATCTAACTAAAATTTATGTTGTTGTCCAACCTC
TGTGAGGAGGGAATGTTTTT

Downstream 100 bases:

>100_bases
GCATAGATTAGGCATAATTTTTTGTGAGACTAGGGATTGAGAGGAACCAGGAGATATGAAGCCATCAGCAATCACTCTCA
GCGTTCATAACTTCCCTGTA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSE
LGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSLDDIPSADDSLDED

Sequences:

>Translated_133_residues
MATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSE
LGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSLDDIPSADDSLDED
>Mature_132_residues
ATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSEL
GARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSLDDIPSADDSLDED

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=108, Percent_Identity=38.8888888888889, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_ANAVT (Q3M9Q8)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_323173.1
- ProteinModelPortal:   Q3M9Q8
- STRING:   Q3M9Q8
- GeneID:   3682026
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_2665
- NMPDR:   fig|240292.3.peg.939
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q3M9Q8
- ProtClustDB:   PRK00521
- BioCyc:   AVAR240292:AVA_2665-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14682; Mature: 14551

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCC
EAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSL
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC
DDIPSADDSLDED
CCCCCCCCCCCCC
>Mature Secondary Structure 
ATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCC
EAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSL
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCC
DDIPSADDSLDED
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA