| Definition | Anabaena variabilis ATCC 29413 chromosome, complete genome. |
|---|---|
| Accession | NC_007413 |
| Length | 6,365,727 |
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The map label for this gene is yhdF [H]
Identifier: 75908644
GI number: 75908644
Start: 3016407
End: 3017264
Strand: Direct
Name: yhdF [H]
Synonym: Ava_2428
Alternate gene names: 75908644
Gene position: 3016407-3017264 (Clockwise)
Preceding gene: 75908642
Following gene: 75908645
Centisome position: 47.39
GC content: 41.61
Gene sequence:
>858_bases ATGGCAGAAAAGCAAACATTACAACCACCGCAGCAGCAAAAAACACCAGGTACAGAATCAAAAATGCAACCAAAACCTCA AGCTGATGATGCTCGGTATCTGGGTAGCGGTAAATTAAAAGATAAAGTTGCCTTGATTACTGGTGGGGATAGTGGGATTG GTCGGGCTGTGGCGATCGCCTATGCTAAAGAGGGTGCAGATGTAGCCTTTGTTTACTTGAGTGAACATGGCGATGCGGAA GAAACCAAAAATTTGGTAGAAGAACAAGGACGGCGTGCTGTATCTATCGCCGGGGATATAACTGATGAGGCTTTTTGTCA GCGTGCAATTCAACAAACTGTAGATGAGTTTGGTAAACTGGATATTCTCATCAATAATGCGGCTGAACAACATCCCCAAG AAAGCATTGAAGATATTACTAAAGAGCAGTTAGAACGGACATTCAGCACTAACATTTTCTCAATGTTCTACTTGACAAAA GCAGCACTCAAGCATCTGAAACAAGGTAGCGCTATTATCAATACTACTTCAGTTACAGCTTATAAAGGTAGTTCACATTT ACTTGATTATTCTGCAACAAAAGGGGCAATTGTTGCCTTTACTCGTTCCTTATCACAAAATCTCATTAGTAAAGGTATCC GGGTTAATGCTGTGGCACCTGGGCCAATTTGGACACCTTTAATTCCCTCGACATTCCCCACAGAAAAAGTAGAAACCTTT GGTAAACAAGTACCGATGCAACGAGCAGGACAACCGGAAGAAGTTGCACCTAGTTATGTGTTTTTAGCTTCTGATGATTC GTCTTATATGTCTGGTCAAGTTTTACATCCTAATGGTGGGGAAGTAGTTAATGGCTAA
Upstream 100 bases:
>100_bases ATTAAACCTTGGGTTGATCTATCGATCCAAGGTTTAATTGTGTGGATGAAAATTTAATTTGTTGATCGAGAAGTTGTAGG TCTATTACCAGGAGAAACAT
Downstream 100 bases:
>100_bases ATAGTCTAAATTTATGATTGAGAATTCAGCATAAATTATCTCTTATCTATTCTGGATTCTCACTCTTGAACGTTAATGTA TGTCTGCCAACGGAGAGATG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MAEKQTLQPPQQQKTPGTESKMQPKPQADDARYLGSGKLKDKVALITGGDSGIGRAVAIAYAKEGADVAFVYLSEHGDAE ETKNLVEEQGRRAVSIAGDITDEAFCQRAIQQTVDEFGKLDILINNAAEQHPQESIEDITKEQLERTFSTNIFSMFYLTK AALKHLKQGSAIINTTSVTAYKGSSHLLDYSATKGAIVAFTRSLSQNLISKGIRVNAVAPGPIWTPLIPSTFPTEKVETF GKQVPMQRAGQPEEVAPSYVFLASDDSSYMSGQVLHPNGGEVVNG
Sequences:
>Translated_285_residues MAEKQTLQPPQQQKTPGTESKMQPKPQADDARYLGSGKLKDKVALITGGDSGIGRAVAIAYAKEGADVAFVYLSEHGDAE ETKNLVEEQGRRAVSIAGDITDEAFCQRAIQQTVDEFGKLDILINNAAEQHPQESIEDITKEQLERTFSTNIFSMFYLTK AALKHLKQGSAIINTTSVTAYKGSSHLLDYSATKGAIVAFTRSLSQNLISKGIRVNAVAPGPIWTPLIPSTFPTEKVETF GKQVPMQRAGQPEEVAPSYVFLASDDSSYMSGQVLHPNGGEVVNG >Mature_284_residues AEKQTLQPPQQQKTPGTESKMQPKPQADDARYLGSGKLKDKVALITGGDSGIGRAVAIAYAKEGADVAFVYLSEHGDAEE TKNLVEEQGRRAVSIAGDITDEAFCQRAIQQTVDEFGKLDILINNAAEQHPQESIEDITKEQLERTFSTNIFSMFYLTKA ALKHLKQGSAIINTTSVTAYKGSSHLLDYSATKGAIVAFTRSLSQNLISKGIRVNAVAPGPIWTPLIPSTFPTEKVETFG KQVPMQRAGQPEEVAPSYVFLASDDSSYMSGQVLHPNGGEVVNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=31.2775330396476, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=31.8181818181818, Blast_Score=114, Evalue=7e-26, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=29.2490118577075, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=29.2, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI19923817, Length=264, Percent_Identity=28.7878787878788, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=29.8039215686275, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI10190704, Length=269, Percent_Identity=30.1115241635688, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=32.7014218009479, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI5031737, Length=242, Percent_Identity=28.5123966942149, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=29.5546558704453, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=27.4509803921569, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI210032110, Length=184, Percent_Identity=28.804347826087, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=25.296442687747, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI4504505, Length=237, Percent_Identity=26.1603375527426, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI224922801, Length=168, Percent_Identity=32.1428571428571, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI4503301, Length=205, Percent_Identity=27.8048780487805, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI7706318, Length=214, Percent_Identity=26.6355140186916, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=28.4974093264249, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI142976729, Length=197, Percent_Identity=26.9035532994924, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40807363, Length=224, Percent_Identity=26.3392857142857, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI310128830, Length=176, Percent_Identity=27.8409090909091, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI310115468, Length=176, Percent_Identity=27.8409090909091, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=27.5675675675676, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=29.7560975609756, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI109715829, Length=255, Percent_Identity=25.0980392156863, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789378, Length=275, Percent_Identity=50.9090909090909, Blast_Score=282, Evalue=2e-77, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=37.6984126984127, Blast_Score=158, Evalue=3e-40, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=33.469387755102, Blast_Score=134, Evalue=6e-33, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=33.4615384615385, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.1740890688259, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=30.2788844621514, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=33.2, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=29.6296296296296, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI2367365, Length=239, Percent_Identity=30.9623430962343, Blast_Score=104, Evalue=7e-24, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=27.6, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=26.4822134387352, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=27.34375, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=27.3076923076923, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=27.7992277992278, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788891, Length=244, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=6e-14, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=33.7349397590361, Blast_Score=121, Evalue=4e-28, Organism=Caenorhabditis elegans, GI17555706, Length=253, Percent_Identity=32.4110671936759, Blast_Score=120, Evalue=7e-28, Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=31.8367346938775, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=34.9809885931559, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=33.7164750957854, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=30.9236947791165, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=33.7164750957854, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=32.0610687022901, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=34.7014925373134, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=34.8659003831418, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=33.9622641509434, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=32.319391634981, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=31.0606060606061, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=30.7692307692308, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=30.7692307692308, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=32.1969696969697, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=34.2105263157895, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=31.3207547169811, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=31.6981132075472, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=33.969465648855, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=31.9066147859922, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=30.9803921568627, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17536025, Length=264, Percent_Identity=29.9242424242424, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=31.8007662835249, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=28.6290322580645, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=28.3400809716599, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=27.6923076923077, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17564282, Length=204, Percent_Identity=30.3921568627451, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI193203117, Length=243, Percent_Identity=28.8065843621399, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI193203115, Length=248, Percent_Identity=28.2258064516129, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=26.8292682926829, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17567345, Length=264, Percent_Identity=28.030303030303, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561272, Length=267, Percent_Identity=27.7153558052434, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=29.7979797979798, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71982365, Length=203, Percent_Identity=28.0788177339901, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508651, Length=256, Percent_Identity=26.5625, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17558006, Length=227, Percent_Identity=29.9559471365639, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17568967, Length=253, Percent_Identity=24.5059288537549, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71997402, Length=234, Percent_Identity=27.3504273504274, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=31.4432989690722, Blast_Score=79, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=27.5303643724696, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=27.8350515463918, Blast_Score=75, Evalue=9e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=208, Percent_Identity=26.4423076923077, Blast_Score=67, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=34.6613545816733, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=35.3174603174603, Blast_Score=124, Evalue=7e-29, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.9317269076305, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=31.8725099601594, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=29.7619047619048, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=31.9066147859922, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=29.4354838709677, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644337, Length=249, Percent_Identity=35.3413654618474, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=28.3400809716599, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24581726, Length=231, Percent_Identity=31.6017316017316, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281364892, Length=191, Percent_Identity=27.7486910994764, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641232, Length=207, Percent_Identity=22.7053140096618, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007236, Length=241, Percent_Identity=25.7261410788382, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221510726, Length=200, Percent_Identity=32, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24640492, Length=240, Percent_Identity=23.75, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30790; Mature: 30659
Theoretical pI: Translated: 5.41; Mature: 5.41
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEKQTLQPPQQQKTPGTESKMQPKPQADDARYLGSGKLKDKVALITGGDSGIGRAVAIA CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE YAKEGADVAFVYLSEHGDAEETKNLVEEQGRRAVSIAGDITDEAFCQRAIQQTVDEFGKL EECCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCE DILINNAAEQHPQESIEDITKEQLERTFSTNIFSMFYLTKAALKHLKQGSAIINTTSVTA EEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEE YKGSSHLLDYSATKGAIVAFTRSLSQNLISKGIRVNAVAPGPIWTPLIPSTFPTEKVETF ECCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHH GKQVPMQRAGQPEEVAPSYVFLASDDSSYMSGQVLHPNGGEVVNG HHHCCHHHCCCCCCCCCCEEEEECCCCCHHCCEEECCCCCCCCCC >Mature Secondary Structure AEKQTLQPPQQQKTPGTESKMQPKPQADDARYLGSGKLKDKVALITGGDSGIGRAVAIA CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEE YAKEGADVAFVYLSEHGDAEETKNLVEEQGRRAVSIAGDITDEAFCQRAIQQTVDEFGKL EECCCCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCE DILINNAAEQHPQESIEDITKEQLERTFSTNIFSMFYLTKAALKHLKQGSAIINTTSVTA EEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEE YKGSSHLLDYSATKGAIVAFTRSLSQNLISKGIRVNAVAPGPIWTPLIPSTFPTEKVETF ECCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHH GKQVPMQRAGQPEEVAPSYVFLASDDSSYMSGQVLHPNGGEVVNG HHHCCHHHCCCCCCCCCCEEEEECCCCCHHCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]