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The map label for this gene is smpB

Identifier: 75908542

GI number: 75908542

Start: 2887118

End: 2887585

Strand: Direct

Name: smpB

Synonym: Ava_2325

Alternate gene names: 75908542

Gene position: 2887118-2887585 (Clockwise)

Preceding gene: 75908540

Following gene: 75908543

Centisome position: 45.35

GC content: 43.16

Gene sequence:

>468_bases
ATGAGCGATAAGAGCGAAAGTTACAAAGTAATTACTGATAATCGACAAGCCCGTTACTTGTACGAAATCCTGGAAACTTT
TGAAGCCGGCATTCAGTTGACAGGAACAGAGGTTAAGTCAATTCGTGCAGGGAAAGTAAACCTTCAAGATGGTTATGCTT
TGCTTCGAGATGGTGAAATATGGCTAATTAATGCCCATATCTCTCCCTATAACGCTAGTGGGCAGTATTTCAATCATGAA
CCAAGACGGACGCGCAAGCTGTTATTACACCGTCAAGAAATTCGGAAGCTGATTGGCAAGGTAGAGCAGCAGGGCTTAAC
ATTAGTTCCCTTGAAAATGTACCTCAAACGTGGCTGGGTCAAAGTTAGTATTGCTCTCGGTAAGGGGAAAAAGCTCCACG
ATAAGCGAGAAAGCCTGAAACGTCGCCAAGACCAGCGTGATATTCAACGAGCAATGAAAAATTATTAG

Upstream 100 bases:

>100_bases
CGCAGGCATCAGAACTTTTCAAGGCAGAGGGGTAGAGGGAGAGGTTCTAGCATCCATTCAAACTATTTTTGCAGTAAGTT
TAAAAGCAACCTAATTCTCA

Downstream 100 bases:

>100_bases
TTGTGATTGTTCCTCAATTACTCCACTGGAGTTAGACAGCGATGGCTTCGCCCGCCGCAGGCATCGCAACAGTGGGTGGA
ATGTCATCACCACTAATAGA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSDKSESYKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEIWLINAHISPYNASGQYFNHE
PRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLKRGWVKVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY

Sequences:

>Translated_155_residues
MSDKSESYKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEIWLINAHISPYNASGQYFNHE
PRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLKRGWVKVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY
>Mature_154_residues
SDKSESYKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEIWLINAHISPYNASGQYFNHEP
RRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLKRGWVKVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=145, Percent_Identity=49.6551724137931, Blast_Score=143, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_ANAVT (Q3MAP3)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_322838.1
- ProteinModelPortal:   Q3MAP3
- SMR:   Q3MAP3
- STRING:   Q3MAP3
- GeneID:   3683595
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_2325
- NMPDR:   fig|240292.3.peg.205
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q3MAP3
- ProtClustDB:   PRK05422
- BioCyc:   AVAR240292:AVA_2325-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18155; Mature: 18024

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKSESYKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEI
CCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEECCHHHHEECCEEECCCCEEEEECCCE
WLINAHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLKRGWV
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCCE
KVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDKSESYKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEI
CCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEECCHHHHEECCEEECCCCEEEEECCCE
WLINAHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLKRGWV
EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHCCCE
KVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA