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The map label for this gene is cmpR [H]

Identifier: 75908499

GI number: 75908499

Start: 2837891

End: 2838841

Strand: Direct

Name: cmpR [H]

Synonym: Ava_2282

Alternate gene names: 75908499

Gene position: 2837891-2838841 (Clockwise)

Preceding gene: 75908497

Following gene: 75908500

Centisome position: 44.58

GC content: 34.7

Gene sequence:

>951_bases
ATGAACAGTTACCTAGATTTAATCCACAGAGATAGTCTTTTAAATTCCTTAAGCCTAGAGCATCTGAGAATTTTTGAGGC
GATCGCGCGACATAAAAGTTTCACCCGTGCAGCCGAAGAATTGTTCACTACCCAGCCTTCTGTCTCACGTCATATTAAAC
AATTAACGGAAACAATTGGTTTGCCTCTATTTAAATATGTAGATAACTGCATTCAACTGACACCAACAGGGGAAGAATTA
TTAGTTATTTACCAGGAAATATTTCAGTATTTAGAAAATTTTGATACAAAATTAGTTGATTTGAAAGATAGCAATCAAGG
CTGTTTAAAAGTCTCGGCTGTAACGACCAGCAAGTATGTTATTACTAATTTGTTGCAACCATTTTGCAAACTTTATCCTG
ATATTAGAATTGCCCTTGAGTTTACAAATCATGAAGTCATCTTAACCAGAATACAAGAAAATGCAGATGACTTTTATATC
CTGGGGTATCCACCAAAAAAAGAAGATATTGAAATCAAGCCATTTCTGGATAATCCTTTAGTGGTAGTTGCTCCATCAAA
TCATCCTTTTGTTAAGCAATCATCTATTTCTTTGGAACGTTTAGCTAAAGAACAATTAATCATGCGAGAAAGAGGCTCGG
AAACTCGTATGGCTGTAGAAATGTTATTTGCTGAACGGGGAATCAGAATGCCGGTTAAATTAGAGGTAAGTAGTAATAAT
GCAACTAAACAAGCAGTAATTGAAGGTTTAGGTCTAGCAGTTTTATCAATACATACCTTATATCCTGAATTACAACGAAA
TCAGCTATCAATCTTAAATGTAAAGGGGTTTCCTATTCTTCAACAATGGCAAATAGCTTACCCGAAGAAAAAATGGCTAT
CTCCTATTGTGAGTACTTTTTTAGAGTACTTACTAACAGAAGGAGTCAGAACTAAAAGTGAGAATTTTTGA

Upstream 100 bases:

>100_bases
AATCCTCACAAAATCCTCATAATTCTTATTTATTATCTGCAATACTAGCCAAGTACAAGTTACTTTTGCTTGACAGTAGC
TTGTCTGTCGAATTATTTAT

Downstream 100 bases:

>100_bases
TATTGAGGAATCTGGTAATAGGTAATTGGATTATTACCTATTACCTATATCGGCAGGGTACAGTATGCAAACTATAGCTA
GAGTATAAAAAATTGTCTAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNSYLDLIHRDSLLNSLSLEHLRIFEAIARHKSFTRAAEELFTTQPSVSRHIKQLTETIGLPLFKYVDNCIQLTPTGEEL
LVIYQEIFQYLENFDTKLVDLKDSNQGCLKVSAVTTSKYVITNLLQPFCKLYPDIRIALEFTNHEVILTRIQENADDFYI
LGYPPKKEDIEIKPFLDNPLVVVAPSNHPFVKQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
ATKQAVIEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTFLEYLLTEGVRTKSENF

Sequences:

>Translated_316_residues
MNSYLDLIHRDSLLNSLSLEHLRIFEAIARHKSFTRAAEELFTTQPSVSRHIKQLTETIGLPLFKYVDNCIQLTPTGEEL
LVIYQEIFQYLENFDTKLVDLKDSNQGCLKVSAVTTSKYVITNLLQPFCKLYPDIRIALEFTNHEVILTRIQENADDFYI
LGYPPKKEDIEIKPFLDNPLVVVAPSNHPFVKQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
ATKQAVIEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTFLEYLLTEGVRTKSENF
>Mature_316_residues
MNSYLDLIHRDSLLNSLSLEHLRIFEAIARHKSFTRAAEELFTTQPSVSRHIKQLTETIGLPLFKYVDNCIQLTPTGEEL
LVIYQEIFQYLENFDTKLVDLKDSNQGCLKVSAVTTSKYVITNLLQPFCKLYPDIRIALEFTNHEVILTRIQENADDFYI
LGYPPKKEDIEIKPFLDNPLVVVAPSNHPFVKQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
ATKQAVIEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTFLEYLLTEGVRTKSENF

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=27.681660899654, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=26.8965517241379, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=27.0161290322581, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=23.1292517006803, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=23.9057239057239, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=23.5059760956175, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=26.3157894736842, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=23.8095238095238, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=295, Percent_Identity=26.4406779661017, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788748, Length=239, Percent_Identity=22.5941422594142, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786401, Length=308, Percent_Identity=23.3766233766234, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789173, Length=128, Percent_Identity=37.5, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=252, Percent_Identity=20.6349206349206, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790208, Length=294, Percent_Identity=24.8299319727891, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=143, Percent_Identity=31.4685314685315, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081904, Length=251, Percent_Identity=23.1075697211155, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789506, Length=194, Percent_Identity=25.2577319587629, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36315; Mature: 36315

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSYLDLIHRDSLLNSLSLEHLRIFEAIARHKSFTRAAEELFTTQPSVSRHIKQLTETIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
LPLFKYVDNCIQLTPTGEELLVIYQEIFQYLENFDTKLVDLKDSNQGCLKVSAVTTSKYV
CHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECHHHHH
ITNLLQPFCKLYPDIRIALEFTNHEVILTRIQENADDFYILGYPPKKEDIEIKPFLDNPL
HHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCEEEECCCCCCCCEEEEEECCCCE
VVVAPSNHPFVKQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
EEEECCCCCCEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
ATKQAVIEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHH
LEYLLTEGVRTKSENF
HHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNSYLDLIHRDSLLNSLSLEHLRIFEAIARHKSFTRAAEELFTTQPSVSRHIKQLTETIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
LPLFKYVDNCIQLTPTGEELLVIYQEIFQYLENFDTKLVDLKDSNQGCLKVSAVTTSKYV
CHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECHHHHH
ITNLLQPFCKLYPDIRIALEFTNHEVILTRIQENADDFYILGYPPKKEDIEIKPFLDNPL
HHHHHHHHHHHCCCEEEEEEECCCEEEEEEECCCCCCEEEECCCCCCCCEEEEEECCCCE
VVVAPSNHPFVKQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
EEEECCCCCCEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
ATKQAVIEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHH
LEYLLTEGVRTKSENF
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA