Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 75908480

GI number: 75908480

Start: 2819160

End: 2820050

Strand: Direct

Name: dppC [H]

Synonym: Ava_2263

Alternate gene names: 75908480

Gene position: 2819160-2820050 (Clockwise)

Preceding gene: 75908478

Following gene: 75908481

Centisome position: 44.29

GC content: 45.45

Gene sequence:

>891_bases
ATGACCATCACTAAACGTATACTGCCAAAATGGGGACTTTTTGTCAAAAAGCCCAACCTTTCCCAAAAATTAATGCTGAT
TGGGTTAGCCATCACCCTATTTTTCATCTTCTTGGCATTCTTCGCGCCTGTATTGCAAAGTTGGGGATGGATACAGAACC
CTAGAGAGTTTCTGGCTAACACTCCTCAAGAAGCACCATCAGCCAAACATTGGTTCGGAACTAGTCTTTTAGGACATGAT
GTTTTTTCGCGGACATTATTTGGCGCACAAGCAGCGTTGCAAGTGGTGATTTTAGCCACGGCGCTGAGTATGATAGTTGG
CGTGCCGTTGGGGATGGTGAGTGGTTACCTTGGCGGTAGGTTAGACAAGGCGTTACTGTTTCTCATGGATAGTATCTACA
CCTTACCGGGACTGCTATTGTCGGTAACCCTGGCGTTTGTAGTAGGCAGAGGAATCTTAAATGCAGCGATCGCTATTAGT
ATCGCATACATTCCCCAATACTACCGCGTTGTACGTAACCACACCGTCAGCGTCAAAACTGAAGTATTCATCGAAGCAGC
GCAAGCAATGGGGGCTTCTACTTGGATTGTGCTTTCTCGTTATCTGTTTTTCAATGTCATTCAAAGCGTACCCGTACTTT
TCACCCTCAACGCCGCCGATGCAATTTTGGTACTAGGCGGTTTGGGTTTTTTAGGGCTAGGATTACCGGAAGAAGTACCA
GAATGGGGGCATGATTTAAAACAAGCTCTAGAAGCACTCCCCACTGGGATTTGGTGGACTACACTATTTCCCGGTTTAGC
AATGACATTCATGGTAGTAGGGTTATCACTACTTGGAGAGGGGTTAAATGAATTTGTCAATCCTCGATTACGAGGAGAAA
ATCGGAAATAG

Upstream 100 bases:

>100_bases
CATGAGAGCGTCGAGTACAATATAAATATACACTAATCCCCAATCTTCACATTGATATGTAAAATGGTCAGCGTATCTTG
CGCTATGCAGGCGATCGCTC

Downstream 100 bases:

>100_bases
TCATTGGTCATTGGTCAATAGTCATTAGATTATGGACAATTGTACAGACGCTATTAATCGCGTCTCTGACAACTGACTAT
GGACTTTTTTATTAATTACT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTITKRILPKWGLFVKKPNLSQKLMLIGLAITLFFIFLAFFAPVLQSWGWIQNPREFLANTPQEAPSAKHWFGTSLLGHD
VFSRTLFGAQAALQVVILATALSMIVGVPLGMVSGYLGGRLDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAIS
IAYIPQYYRVVRNHTVSVKTEVFIEAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVP
EWGHDLKQALEALPTGIWWTTLFPGLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK

Sequences:

>Translated_296_residues
MTITKRILPKWGLFVKKPNLSQKLMLIGLAITLFFIFLAFFAPVLQSWGWIQNPREFLANTPQEAPSAKHWFGTSLLGHD
VFSRTLFGAQAALQVVILATALSMIVGVPLGMVSGYLGGRLDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAIS
IAYIPQYYRVVRNHTVSVKTEVFIEAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVP
EWGHDLKQALEALPTGIWWTTLFPGLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK
>Mature_295_residues
TITKRILPKWGLFVKKPNLSQKLMLIGLAITLFFIFLAFFAPVLQSWGWIQNPREFLANTPQEAPSAKHWFGTSLLGHDV
FSRTLFGAQAALQVVILATALSMIVGVPLGMVSGYLGGRLDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAISI
AYIPQYYRVVRNHTVSVKTEVFIEAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVPE
WGHDLKQALEALPTGIWWTTLFPGLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=236, Percent_Identity=36.0169491525424, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1787760, Length=264, Percent_Identity=32.1969696969697, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1789964, Length=258, Percent_Identity=34.1085271317829, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1789889, Length=233, Percent_Identity=33.4763948497854, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1787498, Length=269, Percent_Identity=30.4832713754647, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787549, Length=216, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788505, Length=235, Percent_Identity=27.2340425531915, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32448; Mature: 32317

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITKRILPKWGLFVKKPNLSQKLMLIGLAITLFFIFLAFFAPVLQSWGWIQNPREFLAN
CCCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
TPQEAPSAKHWFGTSLLGHDVFSRTLFGAQAALQVVILATALSMIVGVPLGMVSGYLGGR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAISIAYIPQYYRVVRNHTVSVKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
EVFIEAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCHHHH
EWGHDLKQALEALPTGIWWTTLFPGLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TITKRILPKWGLFVKKPNLSQKLMLIGLAITLFFIFLAFFAPVLQSWGWIQNPREFLAN
CCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCC
TPQEAPSAKHWFGTSLLGHDVFSRTLFGAQAALQVVILATALSMIVGVPLGMVSGYLGGR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
LDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAISIAYIPQYYRVVRNHTVSVKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
EVFIEAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCHHHH
EWGHDLKQALEALPTGIWWTTLFPGLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]