Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 75908392

GI number: 75908392

Start: 2688861

End: 2689859

Strand: Direct

Name: rbsC [H]

Synonym: Ava_2173

Alternate gene names: 75908392

Gene position: 2688861-2689859 (Clockwise)

Preceding gene: 75908391

Following gene: 75908393

Centisome position: 42.24

GC content: 47.85

Gene sequence:

>999_bases
ATGAGTCAAACCTTAAGACCTGCCAACAAAAGACCAAACGAGCATCCCAAATCACGCCAGCGTCAATCAATCAACAATCT
TCTGCAAGTTGCAGGTATCCTACCAATCCTGGTTATCATCTGCATTTTATTTTCTCTCCTTAGCCCCAACTTTCCCACAG
CAGGTAACGCCGTCAACATCTTGCGTCAGGCCTCAATCAATATTGTGCTGGCAACCGGGATGACATTTGTCATTCTCACC
GGCGGAATTGACCTTTCCGTTGGGTCAATCTTGGCTGTATCTGCGGTAGTCACAGTCTTAGTATCCCTGCTTCCTGCATT
AGGTTGGGCGGCTGTCCCGGTGGGTTTGTTGACAGGATTACTTTTGGGTTTACTCAATGGCGCTCTCATCACCTTTTTAG
ATGTCCCCCCCTTTATCGTCACCTTGGGTTCATTAACCGCCTTAAGAGGTGCTGCCTTTTTAATAGCCAACGGCACAACA
GTTATTAATCGCAATATCAATTTTGCTTGGATAGGTAATAGCTATGTAGGCTTTCTTCCCTGGCTAGTCATCATCGCCCT
ATTGACTGTAGCCGTGAGTTGGTTCGTCCTCAGACAAACTGTTTTAGGTGTACAGATATATGCAGTGGGTGGTAACGAAC
GCGCCGCACGCTTAACAGGTATTAAAGTCAATCGCGTGTTGTTATTTGTCTATGGTGTGAGTGGATTACTAGCAGGTTTA
GCCGGAATCATGAGCGCCAGCCGTTTGTATAGCGCCACCGGGATGTTAGGACAAGGCTACGAATTAGATGCGATCGCCGC
CGTAATTCTTGGTGGAACCAGCTTCACAGGCGGCATCGGCACCATAGGCGGCACACTCCTTGGTGCATTAATCATCGCCG
TTCTCAACAACGGTTTGACCCTCTTAAATATGTCTTTCTTCTGGCAACTAGTCGTCAAAGGACTAGTCATTATCGCCGCA
GTCATGATTGACAGACTCCGCAGACGTTCCCGACGGTAA

Upstream 100 bases:

>100_bases
AAGGACAACTGGTAGGTGAACTAGACAATAGCATCGGCAAAGAAATCACCCAAGAAAACATTATGCACTATGCAACTGGA
GCATCGGAGGTAACCGCATC

Downstream 100 bases:

>100_bases
AAGAAGACAAGGGAGCAATCAATTCAAAAATATTGTCTCCCTACTTCCCACTCACTGCTTTCAAGACAACCCAGATAAAA
CACCAATTTTTGATAATTCT

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSQTLRPANKRPNEHPKSRQRQSINNLLQVAGILPILVIICILFSLLSPNFPTAGNAVNILRQASINIVLATGMTFVILT
GGIDLSVGSILAVSAVVTVLVSLLPALGWAAVPVGLLTGLLLGLLNGALITFLDVPPFIVTLGSLTALRGAAFLIANGTT
VINRNINFAWIGNSYVGFLPWLVIIALLTVAVSWFVLRQTVLGVQIYAVGGNERAARLTGIKVNRVLLFVYGVSGLLAGL
AGIMSASRLYSATGMLGQGYELDAIAAVILGGTSFTGGIGTIGGTLLGALIIAVLNNGLTLLNMSFFWQLVVKGLVIIAA
VMIDRLRRRSRR

Sequences:

>Translated_332_residues
MSQTLRPANKRPNEHPKSRQRQSINNLLQVAGILPILVIICILFSLLSPNFPTAGNAVNILRQASINIVLATGMTFVILT
GGIDLSVGSILAVSAVVTVLVSLLPALGWAAVPVGLLTGLLLGLLNGALITFLDVPPFIVTLGSLTALRGAAFLIANGTT
VINRNINFAWIGNSYVGFLPWLVIIALLTVAVSWFVLRQTVLGVQIYAVGGNERAARLTGIKVNRVLLFVYGVSGLLAGL
AGIMSASRLYSATGMLGQGYELDAIAAVILGGTSFTGGIGTIGGTLLGALIIAVLNNGLTLLNMSFFWQLVVKGLVIIAA
VMIDRLRRRSRR
>Mature_331_residues
SQTLRPANKRPNEHPKSRQRQSINNLLQVAGILPILVIICILFSLLSPNFPTAGNAVNILRQASINIVLATGMTFVILTG
GIDLSVGSILAVSAVVTVLVSLLPALGWAAVPVGLLTGLLLGLLNGALITFLDVPPFIVTLGSLTALRGAAFLIANGTTV
INRNINFAWIGNSYVGFLPWLVIIALLTVAVSWFVLRQTVLGVQIYAVGGNERAARLTGIKVNRVLLFVYGVSGLLAGLA
GIMSASRLYSATGMLGQGYELDAIAAVILGGTSFTGGIGTIGGTLLGALIIAVLNNGLTLLNMSFFWQLVVKGLVIIAAV
MIDRLRRRSRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=306, Percent_Identity=45.0980392156863, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=40.0621118012422, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1788896, Length=328, Percent_Identity=37.5, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI145693152, Length=320, Percent_Identity=36.875, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=34.4311377245509, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI87082395, Length=289, Percent_Identity=35.2941176470588, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI145693214, Length=257, Percent_Identity=40.4669260700389, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=43.7037037037037, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=35.2112676056338, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787794, Length=245, Percent_Identity=33.0612244897959, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34917; Mature: 34786

Theoretical pI: Translated: 12.00; Mature: 12.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTLRPANKRPNEHPKSRQRQSINNLLQVAGILPILVIICILFSLLSPNFPTAGNAVNI
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LRQASINIVLATGMTFVILTGGIDLSVGSILAVSAVVTVLVSLLPALGWAAVPVGLLTGL
HHHHCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGLLNGALITFLDVPPFIVTLGSLTALRGAAFLIANGTTVINRNINFAWIGNSYVGFLP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCEEEECCCEEEEECCCHHHHHH
WLVIIALLTVAVSWFVLRQTVLGVQIYAVGGNERAARLTGIKVNRVLLFVYGVSGLLAGL
HHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEEECEEHHHHHHHHHHHHHHHHHH
AGIMSASRLYSATGMLGQGYELDAIAAVILGGTSFTGGIGTIGGTLLGALIIAVLNNGLT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
LLNMSFFWQLVVKGLVIIAAVMIDRLRRRSRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQTLRPANKRPNEHPKSRQRQSINNLLQVAGILPILVIICILFSLLSPNFPTAGNAVNI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LRQASINIVLATGMTFVILTGGIDLSVGSILAVSAVVTVLVSLLPALGWAAVPVGLLTGL
HHHHCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGLLNGALITFLDVPPFIVTLGSLTALRGAAFLIANGTTVINRNINFAWIGNSYVGFLP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCEEEECCCEEEEECCCHHHHHH
WLVIIALLTVAVSWFVLRQTVLGVQIYAVGGNERAARLTGIKVNRVLLFVYGVSGLLAGL
HHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCEEECEEHHHHHHHHHHHHHHHHHH
AGIMSASRLYSATGMLGQGYELDAIAAVILGGTSFTGGIGTIGGTLLGALIIAVLNNGLT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
LLNMSFFWQLVVKGLVIIAAVMIDRLRRRSRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]