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The map label for this gene is ynbA [H]

Identifier: 75908055

GI number: 75908055

Start: 2280780

End: 2282366

Strand: Direct

Name: ynbA [H]

Synonym: Ava_1834

Alternate gene names: 75908055

Gene position: 2280780-2282366 (Clockwise)

Preceding gene: 75908052

Following gene: 75908056

Centisome position: 35.83

GC content: 48.77

Gene sequence:

>1587_bases
GTGTGTGCCTATGTCAACCGTCGCGGACAAGTGATTCGTGTTGGTGTAGGCACACCACGTCAAACGCAAATTCCGCCAAT
GGAATTGCCGCGTTATGGTGCAGAACGTCTGAGTGGTATTCGTTGCATTGCTACCCATCTTAAGACAGAACCGCCCAATG
AAGCGGCGCTGACGGCGATGGCAATGCAGCGTTTAGATGCCTTAGTAGTGATAAATATTACCGGGACTGGCTTTACACGA
CGCGGTGGTGGAGCCACAGGATACGTTAAAGAAGCATACTTAGCGCACCTAGTCCCTCAAGATGCCCGTGCTTTGATTCC
TAGTGCAGCGATCGCACCATTAAATAATGGTCAATCTACCAGTTGGACTATATCACCACCATTGGACTTAGATGATCTCG
GACAGCAAGATTTCATCGACTTGGTGGAAGGGCTAGAAGCAGAGTTCCGTCGGGAGTTCATCGCCGAGGAAGTAGACGCT
GATCATGACCGTGTATTGATCGTGGGTGTCATGACCGATAATATGTCACTCCAACAATTCCACGATACCTTGGTGGAATT
GGCACGGTTAGTAGATACAGCCGGTGGAGATGTATTACAGACAGTGCAACAAAAGCGATCGCGCATTCATCCTCAAACCG
TCATTGGTGAAGGTAAAGTCCAAGAAGTTGCCCTCACAGCCCAAACATTGGGATGTAACCTCGTCGTTTTTGACCGCGAC
CTCTCACCCTCCCAAATCCGCAACTTAGAAGCACAAATTGGTCTCCGCGTCGTTGACCGCACCGAAGTTATCTTAGATAT
CTTTGCTCAACGCGCCCAATCTCGCGCCGGTAAATTACAAGTTGAACTGGCGCAACTAGAATATATGCTGCCCAGACTCA
CCGGCAGAGGTCAAGCAATGTCTCGACTAGGGGGTGGTATTGGGACTCGTGGTCCTGGTGAAACCAAACTAGAAACCGAA
CGCCGGGCCATTCAAAAACGTATTTCTCGACTGCAACAAGAAGTTGACCAATTACAAGCCCACCGTTCACGGTTAAGACA
ACGGCGACAACATCGGGAAGTTCCTTCAGTAGCTTTAGTTGGTTATACCAACGCTGGTAAATCCACCTTATTAAATGCCT
TGACCAATGCTGAAGTTTACACCGCAGACCAGTTATTCGCCACCCTTGACCCCACCACGCGCCGCCTAGTTATTCCCCAT
GCAGAAACTGGAGAACCCCAAGGAATTCTGATTACAGACACAGTAGGGTTTATCCACGAATTACCTGCATCATTAATGGA
TGCTTTCCGCGCCACCTTGGAAGAAGTAACAGAAGCCGATGCCTTACTACACCTAGTAGATTTATCTCATCCTGCGTGGT
TGAGTCACATTCGCGCAGTCCGGGAAATATTGGCACAAATGCCAGTTACTCCCGGCCCAGCCTTGGTTGCTTTTAACAAA
ATCGACCAAGTCGATAGCACCACTCTAGCTTTAGCCCAAGAAGAGTTTCCTTTAGCCGTATTTATTTCTGCCAGTCAACG
TTTGGGGTTAGAGACCTTGCGTCTGCGGCTAAGTCTCCTAATTCAATATGCTGTTGACTCTCAGTAA

Upstream 100 bases:

>100_bases
ACTACAGCGACTGTACCACCAGCGCATACCAGGCGATCGCATCACTACGCCTGAGTTTTCCCAGCGTCTGGCAGCAATTA
GCACGGAAATTAACCTACCT

Downstream 100 bases:

>100_bases
ATATCTAGTTCTTTCCATGTGAAAAAGCAGGGGGAAATCTTCTCCCTGCTTCTTAATAAATCTCTTAATGTAAGTTAATC
GGTATATTTCATACCAGCCA

Product: GTP-binding protein, HSR1-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MCAYVNRRGQVIRVGVGTPRQTQIPPMELPRYGAERLSGIRCIATHLKTEPPNEAALTAMAMQRLDALVVINITGTGFTR
RGGGATGYVKEAYLAHLVPQDARALIPSAAIAPLNNGQSTSWTISPPLDLDDLGQQDFIDLVEGLEAEFRREFIAEEVDA
DHDRVLIVGVMTDNMSLQQFHDTLVELARLVDTAGGDVLQTVQQKRSRIHPQTVIGEGKVQEVALTAQTLGCNLVVFDRD
LSPSQIRNLEAQIGLRVVDRTEVILDIFAQRAQSRAGKLQVELAQLEYMLPRLTGRGQAMSRLGGGIGTRGPGETKLETE
RRAIQKRISRLQQEVDQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRRLVIPH
AETGEPQGILITDTVGFIHELPASLMDAFRATLEEVTEADALLHLVDLSHPAWLSHIRAVREILAQMPVTPGPALVAFNK
IDQVDSTTLALAQEEFPLAVFISASQRLGLETLRLRLSLLIQYAVDSQ

Sequences:

>Translated_528_residues
MCAYVNRRGQVIRVGVGTPRQTQIPPMELPRYGAERLSGIRCIATHLKTEPPNEAALTAMAMQRLDALVVINITGTGFTR
RGGGATGYVKEAYLAHLVPQDARALIPSAAIAPLNNGQSTSWTISPPLDLDDLGQQDFIDLVEGLEAEFRREFIAEEVDA
DHDRVLIVGVMTDNMSLQQFHDTLVELARLVDTAGGDVLQTVQQKRSRIHPQTVIGEGKVQEVALTAQTLGCNLVVFDRD
LSPSQIRNLEAQIGLRVVDRTEVILDIFAQRAQSRAGKLQVELAQLEYMLPRLTGRGQAMSRLGGGIGTRGPGETKLETE
RRAIQKRISRLQQEVDQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRRLVIPH
AETGEPQGILITDTVGFIHELPASLMDAFRATLEEVTEADALLHLVDLSHPAWLSHIRAVREILAQMPVTPGPALVAFNK
IDQVDSTTLALAQEEFPLAVFISASQRLGLETLRLRLSLLIQYAVDSQ
>Mature_528_residues
MCAYVNRRGQVIRVGVGTPRQTQIPPMELPRYGAERLSGIRCIATHLKTEPPNEAALTAMAMQRLDALVVINITGTGFTR
RGGGATGYVKEAYLAHLVPQDARALIPSAAIAPLNNGQSTSWTISPPLDLDDLGQQDFIDLVEGLEAEFRREFIAEEVDA
DHDRVLIVGVMTDNMSLQQFHDTLVELARLVDTAGGDVLQTVQQKRSRIHPQTVIGEGKVQEVALTAQTLGCNLVVFDRD
LSPSQIRNLEAQIGLRVVDRTEVILDIFAQRAQSRAGKLQVELAQLEYMLPRLTGRGQAMSRLGGGIGTRGPGETKLETE
RRAIQKRISRLQQEVDQLQAHRSRLRQRRQHREVPSVALVGYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRRLVIPH
AETGEPQGILITDTVGFIHELPASLMDAFRATLEEVTEADALLHLVDLSHPAWLSHIRAVREILAQMPVTPGPALVAFNK
IDQVDSTTLALAQEEFPLAVFISASQRLGLETLRLRLSLLIQYAVDSQ

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133118, Length=251, Percent_Identity=33.0677290836653, Blast_Score=118, Evalue=2e-26,
Organism=Homo sapiens, GI310133116, Length=241, Percent_Identity=33.6099585062241, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI310124269, Length=227, Percent_Identity=34.3612334801762, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI310124267, Length=227, Percent_Identity=34.3612334801762, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI310124171, Length=227, Percent_Identity=34.3612334801762, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI310124169, Length=227, Percent_Identity=34.3612334801762, Blast_Score=116, Evalue=5e-26,
Organism=Escherichia coli, GI1790615, Length=357, Percent_Identity=43.6974789915966, Blast_Score=266, Evalue=3e-72,
Organism=Caenorhabditis elegans, GI17561038, Length=233, Percent_Identity=33.9055793991416, Blast_Score=105, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24650079, Length=326, Percent_Identity=34.6625766871166, Blast_Score=122, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 58089; Mature: 58089

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCAYVNRRGQVIRVGVGTPRQTQIPPMELPRYGAERLSGIRCIATHLKTEPPNEAALTAM
CCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHH
AMQRLDALVVINITGTGFTRRGGGATGYVKEAYLAHLVPQDARALIPSAAIAPLNNGQST
HHHHCCEEEEEEEECCCEECCCCCCCCHHHHHHHHHHCCCHHHHHCCCHHCCCCCCCCCC
SWTISPPLDLDDLGQQDFIDLVEGLEAEFRREFIAEEVDADHDRVLIVGVMTDNMSLQQF
EEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHH
HDTLVELARLVDTAGGDVLQTVQQKRSRIHPQTVIGEGKVQEVALTAQTLGCNLVVFDRD
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEECCCCHHHHEEEHHHHCCEEEEEECC
LSPSQIRNLEAQIGLRVVDRTEVILDIFAQRAQSRAGKLQVELAQLEYMLPRLTGRGQAM
CCHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCHHH
SRLGGGIGTRGPGETKLETERRAIQKRISRLQQEVDQLQAHRSRLRQRRQHREVPSVALV
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRRLVIPHAETGEPQGILITDTVGFIHE
EECCCCHHHHHHHHHCCCEEEHHHHHEECCCCCCEEEECCCCCCCCCCEEEECHHHHHHH
LPASLMDAFRATLEEVTEADALLHLVDLSHPAWLSHIRAVREILAQMPVTPGPALVAFNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHH
IDQVDSTTLALAQEEFPLAVFISASQRLGLETLRLRLSLLIQYAVDSQ
HCCCCCHHHEEECCCCCEEEEEECCHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCAYVNRRGQVIRVGVGTPRQTQIPPMELPRYGAERLSGIRCIATHLKTEPPNEAALTAM
CCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHH
AMQRLDALVVINITGTGFTRRGGGATGYVKEAYLAHLVPQDARALIPSAAIAPLNNGQST
HHHHCCEEEEEEEECCCEECCCCCCCCHHHHHHHHHHCCCHHHHHCCCHHCCCCCCCCCC
SWTISPPLDLDDLGQQDFIDLVEGLEAEFRREFIAEEVDADHDRVLIVGVMTDNMSLQQF
EEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHH
HDTLVELARLVDTAGGDVLQTVQQKRSRIHPQTVIGEGKVQEVALTAQTLGCNLVVFDRD
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEECCCCHHHHEEEHHHHCCEEEEEECC
LSPSQIRNLEAQIGLRVVDRTEVILDIFAQRAQSRAGKLQVELAQLEYMLPRLTGRGQAM
CCHHHHHHHHHHHCEEEEHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCHHH
SRLGGGIGTRGPGETKLETERRAIQKRISRLQQEVDQLQAHRSRLRQRRQHREVPSVALV
HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
GYTNAGKSTLLNALTNAEVYTADQLFATLDPTTRRLVIPHAETGEPQGILITDTVGFIHE
EECCCCHHHHHHHHHCCCEEEHHHHHEECCCCCCEEEECCCCCCCCCCEEEECHHHHHHH
LPASLMDAFRATLEEVTEADALLHLVDLSHPAWLSHIRAVREILAQMPVTPGPALVAFNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEHH
IDQVDSTTLALAQEEFPLAVFISASQRLGLETLRLRLSLLIQYAVDSQ
HCCCCCHHHEEECCCCCEEEEEECCHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]