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The map label for this gene is yjbC [C]

Identifier: 75908041

GI number: 75908041

Start: 2266035

End: 2266901

Strand: Direct

Name: yjbC [C]

Synonym: Ava_1820

Alternate gene names: 75908041

Gene position: 2266035-2266901 (Clockwise)

Preceding gene: 75908039

Following gene: 75908042

Centisome position: 35.6

GC content: 42.21

Gene sequence:

>867_bases
ATGACTGTTGCCCAAACTCTAGCTGTTTTGAATTTTGTAGCGCTTGTGTTTCCTGTAGGGTATTTTGAATTGTCAAATAT
GGAGGCTAGGTTACAAAAAGTTCTTGCTCAATGGGGTATCGCCTCTCGTCGGGAGGCAGAAGAAATGATACGGCGATCGC
GTGTGCAGATAAATGGCACATTGGCTGAATTAGGTCAAAAAGTTAACCCAGAAAGGGATATAATTACAGTTGATGGCAAG
TCAGTATCAGCTCAAAGGCATCACCGTCTAACGTACTTATTATTAAACAAACCCACCGGAGTAGTTTCTACTTGCTACGA
TCCACAGGGTAGAAAAACTGTGTTAGATTTATTGCCAGAAGAATTACGTAAGGGTTCGGGTCTTCACCCAGTTGGTCGCC
TAGACGCATATTCTACAGGAGCATTAATACTGACCAATGATGGAGATTTGACATTTAAGCTGACTCATCCCAGTCATAAT
ATTCCCAAGACTTATCAAATTTTAGTGAAAGGTCATCCCCCAGAAGCAGTGCTAAAAATGTGGCGGGAGGGTGTGCTGTT
AGATGGGAGAAAAACCCGCAAAGCCAAGGTAAGCTTGCTAGAAAGTCTGGCAGAAAAAAGTCGTTTAGAAATCGTTTTGC
AGGAGGGACGCAATCGCCAAATTCGCCGTGTAGCAGAACAATTAGGGTATCCAGTAATTAAATTACATCGTACGGCGATC
GGTTCAATTCAATTACAAACATCAAAACAACCATTATTGCGTGCTGGGAATTACCGCATTCTTCGAGATGACGAGATTCG
TAGTTTACAGGAACAGTTAAAACATATTCCTACGCAACGAATCAAAGTTCAAAACCCCCAACCGTAA

Upstream 100 bases:

>100_bases
ATTATGATTGTTCTTTAGGCTCTCAAATTATCAACCGTAATTTATCGTAAATTCAAGGGTTTAAAACCCTCATCAAAAAC
AAGCAGTCTCAGTTGAGTGA

Downstream 100 bases:

>100_bases
AGATATTTAGTTATCAACTGTCAACTAACACTCAATCCTATTAAGAGATTCAGCTGAGGTAAGGAGTTTAGATAAGTCAT
GAAATGGCTAAAAAGAAAGC

Product: ribosomal large subunit pseudouridine synthase B

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MTVAQTLAVLNFVALVFPVGYFELSNMEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPERDIITVDGK
SVSAQRHHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDGDLTFKLTHPSHN
IPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAI
GSIQLQTSKQPLLRAGNYRILRDDEIRSLQEQLKHIPTQRIKVQNPQP

Sequences:

>Translated_288_residues
MTVAQTLAVLNFVALVFPVGYFELSNMEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPERDIITVDGK
SVSAQRHHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDGDLTFKLTHPSHN
IPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAI
GSIQLQTSKQPLLRAGNYRILRDDEIRSLQEQLKHIPTQRIKVQNPQP
>Mature_287_residues
TVAQTLAVLNFVALVFPVGYFELSNMEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPERDIITVDGKS
VSAQRHHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDGDLTFKLTHPSHNI
PKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIG
SIQLQTSKQPLLRAGNYRILRDDEIRSLQEQLKHIPTQRIKVQNPQP

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=246, Percent_Identity=36.1788617886179, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787524, Length=224, Percent_Identity=37.9464285714286, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1788510, Length=241, Percent_Identity=33.6099585062241, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081838, Length=206, Percent_Identity=33.495145631068, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 32557; Mature: 32426

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVAQTLAVLNFVALVFPVGYFELSNMEARLQKVLAQWGIASRREAEEMIRRSRVQINGT
CCHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCH
LAELGQKVNPERDIITVDGKSVSAQRHHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPE
HHHHHHCCCCCCCEEEECCCCCCHHHHCCEEEEEEECCCCCEEECCCCCCCHHHHHHCHH
ELRKGSGLHPVGRLDAYSTGALILTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKM
HHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHH
WREGVLLDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAI
HHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHH
GSIQLQTSKQPLLRAGNYRILRDDEIRSLQEQLKHIPTQRIKVQNPQP
CEEEEECCCCHHHHCCCEEEECCHHHHHHHHHHHHCCCCEEECCCCCC
>Mature Secondary Structure 
TVAQTLAVLNFVALVFPVGYFELSNMEARLQKVLAQWGIASRREAEEMIRRSRVQINGT
CHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCH
LAELGQKVNPERDIITVDGKSVSAQRHHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPE
HHHHHHCCCCCCCEEEECCCCCCHHHHCCEEEEEEECCCCCEEECCCCCCCHHHHHHCHH
ELRKGSGLHPVGRLDAYSTGALILTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKM
HHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHH
WREGVLLDGRKTRKAKVSLLESLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAI
HHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEHHHHH
GSIQLQTSKQPLLRAGNYRILRDDEIRSLQEQLKHIPTQRIKVQNPQP
CEEEEECCCCHHHHCCCEEEECCHHHHHHHHHHHHCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]