Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 75676304

GI number: 75676304

Start: 2313720

End: 2314220

Strand: Direct

Name: (hspc4-1 [H]

Synonym: Nwi_2118

Alternate gene names: 75676304

Gene position: 2313720-2314220 (Clockwise)

Preceding gene: 75676303

Following gene: 75676305

Centisome position: 68.01

GC content: 60.48

Gene sequence:

>501_bases
ATGAGCATGAGAGATCTCATTCCCTGGAACCGCAGCAGCCGCGTTCCGGTGCAGCGCGGGGAGGAAGGAACGCCCTTCCT
GACTTTGCACCGTGAAATGAACCGCTTGTTCGACGACGTCTTCCGCGGGCTCGACCTCAACCCCTTCCGCTTCGACCGCG
TGTTCGACCGCGCCTGGTCATGGCCGAGCATCGAGGTGAGCGAGAACGACAAAGAGGTGAGGGTCACCGCCGAGCTCCCT
GGCCTCGAGGAAAAAGACGTCGAAGTCCAGCTGTCGAATGGCGTGCTCGCCATCAAGGGCGAGAAGAGGACTGAGACGGA
AGACAATGACAGGCTGTTCAGCGAGCGCTTCTACGGCCGGTTTGAGCGACGCATCCCCGTGGATGACATCGACGAGGACA
AGGTGAACGCGTCCTTCGGCAATGGAGTACTCGTTGTCACCCTGCCGAGATCGGCCGAGGCGCAACGCAACGTGAAGCGC
ATCGCGATCAACGGCAAATAA

Upstream 100 bases:

>100_bases
CAGAAGCAAGCGGCCTGATCGTAAGTCCGATCGGGCCGGCTGGAGGTGGTCGCGTGTGGCCTTGGCCACGCGCGCCCCCG
TTTGAGATAGGAGGCACAAC

Downstream 100 bases:

>100_bases
GCAGAGAGGAGACTCCGGCTGGCGGGAGCTGGCGCGCTCCCGCCGCCACTGAACCGCCCCGAGTTTGCCGGAGGCTCCCA
ACCTTGAGAAGGTGGAGCCA

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSMRDLIPWNRSSRVPVQRGEEGTPFLTLHREMNRLFDDVFRGLDLNPFRFDRVFDRAWSWPSIEVSENDKEVRVTAELP
GLEEKDVEVQLSNGVLAIKGEKRTETEDNDRLFSERFYGRFERRIPVDDIDEDKVNASFGNGVLVVTLPRSAEAQRNVKR
IAINGK

Sequences:

>Translated_166_residues
MSMRDLIPWNRSSRVPVQRGEEGTPFLTLHREMNRLFDDVFRGLDLNPFRFDRVFDRAWSWPSIEVSENDKEVRVTAELP
GLEEKDVEVQLSNGVLAIKGEKRTETEDNDRLFSERFYGRFERRIPVDDIDEDKVNASFGNGVLVVTLPRSAEAQRNVKR
IAINGK
>Mature_165_residues
SMRDLIPWNRSSRVPVQRGEEGTPFLTLHREMNRLFDDVFRGLDLNPFRFDRVFDRAWSWPSIEVSENDKEVRVTAELPG
LEEKDVEVQLSNGVLAIKGEKRTETEDNDRLFSERFYGRFERRIPVDDIDEDKVNASFGNGVLVVTLPRSAEAQRNVKRI
AINGK

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19267; Mature: 19136

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRDLIPWNRSSRVPVQRGEEGTPFLTLHREMNRLFDDVFRGLDLNPFRFDRVFDRAWS
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
WPSIEVSENDKEVRVTAELPGLEEKDVEVQLSNGVLAIKGEKRTETEDNDRLFSERFYGR
CCCEEECCCCCEEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH
FERRIPVDDIDEDKVNASFGNGVLVVTLPRSAEAQRNVKRIAINGK
HHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHCCEEEEEEECC
>Mature Secondary Structure 
SMRDLIPWNRSSRVPVQRGEEGTPFLTLHREMNRLFDDVFRGLDLNPFRFDRVFDRAWS
CCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
WPSIEVSENDKEVRVTAELPGLEEKDVEVQLSNGVLAIKGEKRTETEDNDRLFSERFYGR
CCCEEECCCCCEEEEEEECCCCCCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH
FERRIPVDDIDEDKVNASFGNGVLVVTLPRSAEAQRNVKRIAINGK
HHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA