| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is pgaC [H]
Identifier: 75675981
GI number: 75675981
Start: 1959484
End: 1962153
Strand: Direct
Name: pgaC [H]
Synonym: Nwi_1789
Alternate gene names: 75675981
Gene position: 1959484-1962153 (Clockwise)
Preceding gene: 75675980
Following gene: 75675982
Centisome position: 57.6
GC content: 62.06
Gene sequence:
>2670_bases ATGCGCGCCGTCGTCGCCGTTTTTCTATTTGTGTCCGCCGCGCATGCCGCGCTCTGGGGAGTTCTTCAGGACAAGCAATC AGCCCCCGACTTCAAGGGGGTTCTGACCAGCCTGTCCTACGCACCCTTTGAAGGCGCCGCGCATCCTGACGTCGATAATA TCCCGACCGTCGAGAAGATCCGGACCGACATGAAGGCGCTGGCGCCCCTGACCCGCGCCATCCGTCTGTATTCGTCGACC GGCGGCGTGGAGCTCGTGCCCCCCATCGCCAATGAATTCGGCCTCAAGGTCATGGTCGGCGCGTGGATCGACAAGTTCGT CGAGCGCAACGAGCGCGAGATGCTCGCCGCCATCGATCTCGCCAAGCACAACGGCAACGTCAACGGAATCGTCGTCGGCA ACGAGACGATCTATCGCGGCGACCAGAAGGTTTCAGATCTCATCAAGCTCATTCAGCGCGTAAAAGGCTCCGTGAATGTG CCTGTTACGACGGGTGAAATCTGGAATATCTGGCTGGAGCATCCTGAACTCGCATCATCGGTCGACTTCATCGCCGCGCA CATCCTGCCCTATTGGGAAGGCTTTTCGAGCAAGCAGGCCGTCGATCAGGCTCTCATCATCTATCAGAAATTGCGCGACG CCTTTCCCGGCAAGCGGATCGTGATCGCCGAGTTCGGCTGGCCGAGCGCCGGATATAATCTCCGGAACGCCGATCCCGGT CCTTTCCAGCAGGCGGCCACGCTTCGCAATTTTGTAACCAAGGCCCAGTCGATCGGCATGGAGTACAACATCGTCGAAGC CATCGACCAGCCCTGGAAGTTTTTCGAAGGCGGCGTGGGTCCCTACTGGGGTATCCTCAACGCGGATCGCGAGCCGAAGT TTTCGTGGAGCGGTCCCGTCGTCAATGAAGCTTACTGGAAGCTTGCCGGCATCGCCCTTTTGATCGGCATCCTGCTGTCG CTGCCCATCCTGCGGCTTGTCCGCCCCACGCCGATGCAGACCCTGCTGCTGTCGGTTGCCGCCAACGGCGTCGGCGCCTG GGTCGCGACGGTCTTCGCCTACTGGACCACGCATTACTTCGTTTTCGGTTCGGCTCTCGCGCTGGCGCTCGGATTGACTC TGCTTGTCCCGTTGATCCTGATCGCGATGGCGCGCATCGAGGAGATCGCGACCGTGGCGTTCGGCGAGCGCCCGCGGCGG TTGATTACCAGAGAGGCGGCGGCGGCCGCCCAGGCGGCCAGCGACGCGCCGCTGCCCAAGGTCTCGATTCACGTGCCGGC TTATTTCGAGCCGCCCGAAATGCTCAAGCAGACGCTCGACGCAGTCGCGCGCCTCGACTATCCGAATTTCGAATGCGTCG TGATCATCAACAACACGCCCGATCCCGCCTTCTGGCAACCCATTCAGGATCACTGCCGCGCGCTGGGCGAACGATTCAAG TTCATCAACGCCGAAAAGGTCGAGGGCTTCAAGGCGGGGGCGCTGCGCATCGCCATGGAGCGCACCGCCGCCGACGCCGA GATCATCGGCGTCATCGATGCCGACTATGTGGTGCAGCCCGACTGGTTGAAGGACTTGGTGCCGGCGTTCAACGATCCCG GCGTCGGCCTGGTTCAGGCGCCGCAGGATCACCGCGACGGCGACCGCTCGTTGATGCACTACATCATGAACGGGGAGTAT GCCGGCTTCTTCGATATCGGCATGGTCCAGCGCAACGAGACCAACGCGATCATCGTCCATGGCACGATGTGCCTGATCCG CCGCGCCGCGATGGACATGGCGGGCGGCTGGGCCGGAGACACGATTTGCGAGGACACCGATCTCGGCCTTGCTATCGCGC AGCATGGCTGGGTCACACACTACACCAACACCCGTTACGGCTACGGCCTGCTCCCCGACACGTATGAAGCCTTCAAGAAG CAGCGTCATCGCTGGGCCTATGGCGGCTTCCAGATCGTCAAGAAACACTGGCGGCGCTTTCTGCCGGGCGCGAGCCGCCT GTCGCCAGACCAGAAGCGCGAATTCACCCTGGGATGGCTCAACTGGCTCGGCGCCGAAAGCCTTGGCGTGGTGGTTGCGA TCCTGAACCTGATCTGGGTGCCGATCGTCGCCTTCGCCGACATCGCCATCCCCGACAAGATCCTGACATTGCCCATCATC GCCGCATTCGTCGTGTCGCTGCTCCATTTTCTTACGCTGTACCGCCTTCGCGTACCGATAAAAACGGCGCAGATGCTGGG AGCGATGGTCGCGGCCATGTCCGTGCAGTGGACCGTGTCCCGCGCGGTGGCGCAGGGGCTCATCACGGAACACCTCGCCT TCGCGCGGACATCGAAGGGCGGACTGTCGCGGATGTCGATCGAGTTTCAGGCTTTCTGGGAGGCGGTGATCGGCGTTCTC CTGCTGGTTGGAGCGGCGGTGTTGATCGCATCCAACCAGTACAAGGAAGTCACCGAGATCTACATCTTCGCGGGCGTGCT CGTGCTCCAGAGCCTGCCGTTCCTGTCGGCCGTCGCCATCGCCATCCTTGAGATGTCACGCATCAACCAGTTTTCATTCT GGCGCAATGCGCGAATCCGCAGCGCCGAACTGATCGGGCTGCGGCCCGCTCCGATGGCAACAGGCACGTCGTCTCCCGTC GGCTCCGAGATTCAGCGCGAAACAACCTGA
Upstream 100 bases:
>100_bases GTTGTTAATTATGTCGCAGAATTATGTCTGCTAATGTGTCGGTCGGGCCCAGGGGCAGGTCCGCGTTTCTGGCAGGCATG CCCCTTATGGTTTAGTCGCG
Downstream 100 bases:
>100_bases TCCGGCCACCAACGCCGTTCCCAGACTGCTGGAGAGCTTTGTCGCCAAGTCTGTTTCAACTGCGTTGAATCAGACTCCAG CCTTAACTTTTGATCGAGTA
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: PGA synthase; Poly-beta-1,6-GlcNAc synthase; Biofilm PGA synthesis protein PgaC; N-acetylglucosaminyltransferase PgaC [H]
Number of amino acids: Translated: 889; Mature: 889
Protein sequence:
>889_residues MRAVVAVFLFVSAAHAALWGVLQDKQSAPDFKGVLTSLSYAPFEGAAHPDVDNIPTVEKIRTDMKALAPLTRAIRLYSST GGVELVPPIANEFGLKVMVGAWIDKFVERNEREMLAAIDLAKHNGNVNGIVVGNETIYRGDQKVSDLIKLIQRVKGSVNV PVTTGEIWNIWLEHPELASSVDFIAAHILPYWEGFSSKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLRNADPG PFQQAATLRNFVTKAQSIGMEYNIVEAIDQPWKFFEGGVGPYWGILNADREPKFSWSGPVVNEAYWKLAGIALLIGILLS LPILRLVRPTPMQTLLLSVAANGVGAWVATVFAYWTTHYFVFGSALALALGLTLLVPLILIAMARIEEIATVAFGERPRR LITREAAAAAQAASDAPLPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFWQPIQDHCRALGERFK FINAEKVEGFKAGALRIAMERTAADAEIIGVIDADYVVQPDWLKDLVPAFNDPGVGLVQAPQDHRDGDRSLMHYIMNGEY AGFFDIGMVQRNETNAIIVHGTMCLIRRAAMDMAGGWAGDTICEDTDLGLAIAQHGWVTHYTNTRYGYGLLPDTYEAFKK QRHRWAYGGFQIVKKHWRRFLPGASRLSPDQKREFTLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPDKILTLPII AAFVVSLLHFLTLYRLRVPIKTAQMLGAMVAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLSRMSIEFQAFWEAVIGVL LLVGAAVLIASNQYKEVTEIYIFAGVLVLQSLPFLSAVAIAILEMSRINQFSFWRNARIRSAELIGLRPAPMATGTSSPV GSEIQRETT
Sequences:
>Translated_889_residues MRAVVAVFLFVSAAHAALWGVLQDKQSAPDFKGVLTSLSYAPFEGAAHPDVDNIPTVEKIRTDMKALAPLTRAIRLYSST GGVELVPPIANEFGLKVMVGAWIDKFVERNEREMLAAIDLAKHNGNVNGIVVGNETIYRGDQKVSDLIKLIQRVKGSVNV PVTTGEIWNIWLEHPELASSVDFIAAHILPYWEGFSSKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLRNADPG PFQQAATLRNFVTKAQSIGMEYNIVEAIDQPWKFFEGGVGPYWGILNADREPKFSWSGPVVNEAYWKLAGIALLIGILLS LPILRLVRPTPMQTLLLSVAANGVGAWVATVFAYWTTHYFVFGSALALALGLTLLVPLILIAMARIEEIATVAFGERPRR LITREAAAAAQAASDAPLPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFWQPIQDHCRALGERFK FINAEKVEGFKAGALRIAMERTAADAEIIGVIDADYVVQPDWLKDLVPAFNDPGVGLVQAPQDHRDGDRSLMHYIMNGEY AGFFDIGMVQRNETNAIIVHGTMCLIRRAAMDMAGGWAGDTICEDTDLGLAIAQHGWVTHYTNTRYGYGLLPDTYEAFKK QRHRWAYGGFQIVKKHWRRFLPGASRLSPDQKREFTLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPDKILTLPII AAFVVSLLHFLTLYRLRVPIKTAQMLGAMVAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLSRMSIEFQAFWEAVIGVL LLVGAAVLIASNQYKEVTEIYIFAGVLVLQSLPFLSAVAIAILEMSRINQFSFWRNARIRSAELIGLRPAPMATGTSSPV GSEIQRETT >Mature_889_residues MRAVVAVFLFVSAAHAALWGVLQDKQSAPDFKGVLTSLSYAPFEGAAHPDVDNIPTVEKIRTDMKALAPLTRAIRLYSST GGVELVPPIANEFGLKVMVGAWIDKFVERNEREMLAAIDLAKHNGNVNGIVVGNETIYRGDQKVSDLIKLIQRVKGSVNV PVTTGEIWNIWLEHPELASSVDFIAAHILPYWEGFSSKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLRNADPG PFQQAATLRNFVTKAQSIGMEYNIVEAIDQPWKFFEGGVGPYWGILNADREPKFSWSGPVVNEAYWKLAGIALLIGILLS LPILRLVRPTPMQTLLLSVAANGVGAWVATVFAYWTTHYFVFGSALALALGLTLLVPLILIAMARIEEIATVAFGERPRR LITREAAAAAQAASDAPLPKVSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFWQPIQDHCRALGERFK FINAEKVEGFKAGALRIAMERTAADAEIIGVIDADYVVQPDWLKDLVPAFNDPGVGLVQAPQDHRDGDRSLMHYIMNGEY AGFFDIGMVQRNETNAIIVHGTMCLIRRAAMDMAGGWAGDTICEDTDLGLAIAQHGWVTHYTNTRYGYGLLPDTYEAFKK QRHRWAYGGFQIVKKHWRRFLPGASRLSPDQKREFTLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPDKILTLPII AAFVVSLLHFLTLYRLRVPIKTAQMLGAMVAAMSVQWTVSRAVAQGLITEHLAFARTSKGGLSRMSIEFQAFWEAVIGVL LLVGAAVLIASNQYKEVTEIYIFAGVLVLQSLPFLSAVAIAILEMSRINQFSFWRNARIRSAELIGLRPAPMATGTSSPV GSEIQRETT
Specific function: Probable N-acetylglucosaminyltransferase that catalyzes the polymerization of single monomer units of UDP-N- acetylglucosamine to produce the linear homopolymer poly-beta-1,6- N-acetyl-D-glucosamine (PGA), a biofilm adhesin polysaccharide [H]
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787259, Length=263, Percent_Identity=28.5171102661597, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI87082284, Length=243, Percent_Identity=27.1604938271605, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6321721, Length=269, Percent_Identity=23.0483271375465, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 98028; Mature: 98028
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAVVAVFLFVSAAHAALWGVLQDKQSAPDFKGVLTSLSYAPFEGAAHPDVDNIPTVEKI CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH RTDMKALAPLTRAIRLYSSTGGVELVPPIANEFGLKVMVGAWIDKFVERNEREMLAAIDL HHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH AKHNGNVNGIVVGNETIYRGDQKVSDLIKLIQRVKGSVNVPVTTGEIWNIWLEHPELASS HHCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHCCCCCCEEECCHHHEEEECCCHHHHH VDFIAAHILPYWEGFSSKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLRNADPG HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC PFQQAATLRNFVTKAQSIGMEYNIVEAIDQPWKFFEGGVGPYWGILNADREPKFSWSGPV CHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC VNEAYWKLAGIALLIGILLSLPILRLVRPTPMQTLLLSVAANGVGAWVATVFAYWTTHYF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VFGSALALALGLTLLVPLILIAMARIEEIATVAFGERPRRLITREAAAAAQAASDAPLPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCE VSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFWQPIQDHCRALGERFK EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHH FINAEKVEGFKAGALRIAMERTAADAEIIGVIDADYVVQPDWLKDLVPAFNDPGVGLVQA HCCHHHCCCCHHHHEEEEHHHCCCCCEEEEEECCCCEECCHHHHHHHHCCCCCCCCEEEC PQDHRDGDRSLMHYIMNGEYAGFFDIGMVQRNETNAIIVHGTMCLIRRAAMDMAGGWAGD CCCCCCHHHHHHHHHHCCCCCCEEEECEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCC TICEDTDLGLAIAQHGWVTHYTNTRYGYGLLPDTYEAFKKQRHRWAYGGFQIVKKHWRRF CCCCCCCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH LPGASRLSPDQKREFTLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPDKILTLPII CCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH AAFVVSLLHFLTLYRLRVPIKTAQMLGAMVAAMSVQWTVSRAVAQGLITEHLAFARTSKG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GLSRMSIEFQAFWEAVIGVLLLVGAAVLIASNQYKEVTEIYIFAGVLVLQSLPFLSAVAI CCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH AILEMSRINQFSFWRNARIRSAELIGLRPAPMATGTSSPVGSEIQRETT HHHHHHHCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCC >Mature Secondary Structure MRAVVAVFLFVSAAHAALWGVLQDKQSAPDFKGVLTSLSYAPFEGAAHPDVDNIPTVEKI CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH RTDMKALAPLTRAIRLYSSTGGVELVPPIANEFGLKVMVGAWIDKFVERNEREMLAAIDL HHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHH AKHNGNVNGIVVGNETIYRGDQKVSDLIKLIQRVKGSVNVPVTTGEIWNIWLEHPELASS HHCCCCEEEEEECCCEEECCCHHHHHHHHHHHHHCCCCCCEEECCHHHEEEECCCHHHHH VDFIAAHILPYWEGFSSKQAVDQALIIYQKLRDAFPGKRIVIAEFGWPSAGYNLRNADPG HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC PFQQAATLRNFVTKAQSIGMEYNIVEAIDQPWKFFEGGVGPYWGILNADREPKFSWSGPV CHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC VNEAYWKLAGIALLIGILLSLPILRLVRPTPMQTLLLSVAANGVGAWVATVFAYWTTHYF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VFGSALALALGLTLLVPLILIAMARIEEIATVAFGERPRRLITREAAAAAQAASDAPLPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCE VSIHVPAYFEPPEMLKQTLDAVARLDYPNFECVVIINNTPDPAFWQPIQDHCRALGERFK EEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHHHH FINAEKVEGFKAGALRIAMERTAADAEIIGVIDADYVVQPDWLKDLVPAFNDPGVGLVQA HCCHHHCCCCHHHHEEEEHHHCCCCCEEEEEECCCCEECCHHHHHHHHCCCCCCCCEEEC PQDHRDGDRSLMHYIMNGEYAGFFDIGMVQRNETNAIIVHGTMCLIRRAAMDMAGGWAGD CCCCCCHHHHHHHHHHCCCCCCEEEECEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCCC TICEDTDLGLAIAQHGWVTHYTNTRYGYGLLPDTYEAFKKQRHRWAYGGFQIVKKHWRRF CCCCCCCCCEEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH LPGASRLSPDQKREFTLGWLNWLGAESLGVVVAILNLIWVPIVAFADIAIPDKILTLPII CCCCCCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH AAFVVSLLHFLTLYRLRVPIKTAQMLGAMVAAMSVQWTVSRAVAQGLITEHLAFARTSKG HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GLSRMSIEFQAFWEAVIGVLLLVGAAVLIASNQYKEVTEIYIFAGVLVLQSLPFLSAVAI CCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH AILEMSRINQFSFWRNARIRSAELIGLRPAPMATGTSSPVGSEIQRETT HHHHHHHCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]