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The map label for this gene is nodB [H]

Identifier: 75675777

GI number: 75675777

Start: 1730712

End: 1731638

Strand: Direct

Name: nodB [H]

Synonym: Nwi_1585

Alternate gene names: 75675777

Gene position: 1730712-1731638 (Clockwise)

Preceding gene: 75675776

Following gene: 75675778

Centisome position: 50.87

GC content: 60.73

Gene sequence:

>927_bases
ATGCGCATGACGGCGGTGCTGATTTCTGCAGGCGTGATTTCGTTGTGCGCAGCCACGGTTGCCTGGTCGCAGACACCGGC
GCCCAAGGGAGCTCAGAACGCCGCGCCGGTTCCCGTGCGGGCCAGCGGGCCGCAGGTCGCCTGTAACGGAAGCCCCGACG
CGCTCGGTGTTGCGCGCGTGGTCCAGATCGACACGACCGGCGGTCCGGGCTTCGGTTTCGAGCATTTCAAGCAACTCGAC
TTCCTGCGGGACAAGGAAGTGGTGTTGACGTTCGATGATGGCCCATGGCCCGGAAAAACGCCCGCCGTGTTGAAGGCGCT
TGCGGATCAATGCACCACCGGCATCTTCTTCTCGATCGGCAAGCACGCGACATATCATCCCGAAATCTTGCGGAATGTCG
CCGCCGCAGGACACACGATCGGCGGTCACACCTGGTCCCACGCCAACCTCAACAACAAGAAGCTGTCCGAGGACCAGCGC
AAGGAAGAAATCGAGAAAGGCTTCAGCGCCGTCAAATGGGCGCTCGAAGCTGAACCCGCGCCGTTCTTCCGCTTTCCGGC
GCTTCAGCATCCGCCGGAAATCGTGACGTATCTGGGCGAACGCAATGTCGCGATTTTCTCCTGCGACGTCGACTCGTTCG
ACTTCAAGACCCGCAATGCCGAACAGGTGGTCACCAACATCTTCAAGAAACTGGACAAGGTCGGCAAGGGCATCATCCTG
ATGCACGATTTTCAGAAGCATACGGCGGAGGCGCTTCCTGAGATTCTGCGCAGGCTCAAGGCGGGCGGCTACAAGGTGGC
GCAGATGAAGGCCAAGGCCCCGATCCAGACGCTTGCGCAATATGACGAGGCGCTGAAGAAGGATACCAAGCTCCCGACCG
TGAGCACGCGCCCGATCGATAGCGTAGTCCAGACCATCTCCGAGTAG

Upstream 100 bases:

>100_bases
CAGTTGGGGATAAATGCCGTTTCCGTCGAAGTGGCCGCCCCTGGCTGCGCTAGGATAACAAAGCGGACGACTCAACCGCG
AAACCTTTGGGGTGATCGAG

Downstream 100 bases:

>100_bases
CGTGACGATTCAGGACGAAAAATGCTTCGCATCGAAGGTTACGTTATCGTGTCGGCTGACGGAATGCTTGCCGATGCCAA
CCGGGTGATGCCCGAAGCGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MRMTAVLISAGVISLCAATVAWSQTPAPKGAQNAAPVPVRASGPQVACNGSPDALGVARVVQIDTTGGPGFGFEHFKQLD
FLRDKEVVLTFDDGPWPGKTPAVLKALADQCTTGIFFSIGKHATYHPEILRNVAAAGHTIGGHTWSHANLNNKKLSEDQR
KEEIEKGFSAVKWALEAEPAPFFRFPALQHPPEIVTYLGERNVAIFSCDVDSFDFKTRNAEQVVTNIFKKLDKVGKGIIL
MHDFQKHTAEALPEILRRLKAGGYKVAQMKAKAPIQTLAQYDEALKKDTKLPTVSTRPIDSVVQTISE

Sequences:

>Translated_308_residues
MRMTAVLISAGVISLCAATVAWSQTPAPKGAQNAAPVPVRASGPQVACNGSPDALGVARVVQIDTTGGPGFGFEHFKQLD
FLRDKEVVLTFDDGPWPGKTPAVLKALADQCTTGIFFSIGKHATYHPEILRNVAAAGHTIGGHTWSHANLNNKKLSEDQR
KEEIEKGFSAVKWALEAEPAPFFRFPALQHPPEIVTYLGERNVAIFSCDVDSFDFKTRNAEQVVTNIFKKLDKVGKGIIL
MHDFQKHTAEALPEILRRLKAGGYKVAQMKAKAPIQTLAQYDEALKKDTKLPTVSTRPIDSVVQTISE
>Mature_308_residues
MRMTAVLISAGVISLCAATVAWSQTPAPKGAQNAAPVPVRASGPQVACNGSPDALGVARVVQIDTTGGPGFGFEHFKQLD
FLRDKEVVLTFDDGPWPGKTPAVLKALADQCTTGIFFSIGKHATYHPEILRNVAAAGHTIGGHTWSHANLNNKKLSEDQR
KEEIEKGFSAVKWALEAEPAPFFRFPALQHPPEIVTYLGERNVAIFSCDVDSFDFKTRNAEQVVTNIFKKLDKVGKGIIL
MHDFQKHTAEALPEILRRLKAGGYKVAQMKAKAPIQTLAQYDEALKKDTKLPTVSTRPIDSVVQTISE

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33512; Mature: 33512

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMTAVLISAGVISLCAATVAWSQTPAPKGAQNAAPVPVRASGPQVACNGSPDALGVARV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEEEE
VQIDTTGGPGFGFEHFKQLDFLRDKEVVLTFDDGPWPGKTPAVLKALADQCTTGIFFSIG
EEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
KHATYHPEILRNVAAAGHTIGGHTWSHANLNNKKLSEDQRKEEIEKGFSAVKWALEAEPA
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCC
PFFRFPALQHPPEIVTYLGERNVAIFSCDVDSFDFKTRNAEQVVTNIFKKLDKVGKGIIL
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
MHDFQKHTAEALPEILRRLKAGGYKVAQMKAKAPIQTLAQYDEALKKDTKLPTVSTRPID
EEHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
SVVQTISE
HHHHHHCC
>Mature Secondary Structure
MRMTAVLISAGVISLCAATVAWSQTPAPKGAQNAAPVPVRASGPQVACNGSPDALGVARV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCEEEE
VQIDTTGGPGFGFEHFKQLDFLRDKEVVLTFDDGPWPGKTPAVLKALADQCTTGIFFSIG
EEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
KHATYHPEILRNVAAAGHTIGGHTWSHANLNNKKLSEDQRKEEIEKGFSAVKWALEAEPA
CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCC
PFFRFPALQHPPEIVTYLGERNVAIFSCDVDSFDFKTRNAEQVVTNIFKKLDKVGKGIIL
CCEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
MHDFQKHTAEALPEILRRLKAGGYKVAQMKAKAPIQTLAQYDEALKKDTKLPTVSTRPID
EEHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHH
SVVQTISE
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968; 8850088 [H]