Click here to switch to the map view.

The map label for this gene is intR [C]

Identifier: 75675679

GI number: 75675679

Start: 1618354

End: 1619484

Strand: Direct

Name: intR [C]

Synonym: Nwi_1487

Alternate gene names: 75675679

Gene position: 1618354-1619484 (Clockwise)

Preceding gene: 75675661

Following gene: 75675682

Centisome position: 47.57

GC content: 60.3

Gene sequence:

>1131_bases
ATGAAGGGTCATATCCAGCAGCGCGGCAAAACCTCTTGGCGTCTCAAGTTCGATGCAGGGCGCGACGAAAAGACGGGAAA
GCGCAATGTTCAGTTCGTTACATTCCGCGGCACCAAGCGCCAAGCGCAGACCAAACTGGCCGAGTTGATCGCATCGGTTG
CGCAGTCGAAATACATCGAACCAAGCAAGATCACGGTGGCGGACTATGTGCGTGGTCGAGTTGACCAGTGGGAAGACTCC
GGCGACATCAGCGCCCGGACGGCAGCAAGGTATCGTGAACTGACCGAAAATCAGATCGTCCCGCACCTCGGCGCGAAACT
GATCCAGAAGCTCCGCACCGATGACATCGAGGAATGGCACACCACACTGCGCAGCGGCGGCCGGGCGAAGGGCAAAGGCG
GCTTGGCACCACGGACGATCGGCCACGCCCACAGGGTACTTGGCAAGGCAATGCGTGACGCGCTCCGCTTCGAAAAGATC
ACCAAGAACGTCACCGCTCTGCAGGCTGCTCCGAAGGTCGACGATGACGAAATGGCCATCGTGCAGGACGTCCCTGCCCT
AATCGACCGGCTGCGCCACCATCGGCTGTTCCCCTTGGCGATGATCGCCCTGTTTACAGGGATGCGGATCGGCGAGGTTC
TGGCGCTCCGCTGGGGCCGGGTCGACCTTGATCGAAAGGTAATCGAGGTTCGCGAGGCAATCGAGGAAACCAAGGCTCAC
GGCATCCGAATCAAGCCTCCAAAGACAAAGGCGGGACGACGGGACGTCACCCTGCCCGACGTTCTGGTCGACGTGCTGCG
CGACTATCGCAAAACCCATCTGGAACGACGGGTCGCGCTTGGCTTGGGCAAGTTGCCCGACGACGCGCTGCTATTCGCTG
GGCCGGGCGGTTCCCTGCCCTCCCAGAAGTATTACAGCAAGGCGTGGAGCGATCTTGATGTCGGCGTGCCGTTCCATGGG
CTGCGCCATACCCATGCGAGCCAGCTTATCGACGCCGGCGTGGATATCGTCACGATTTCCAAAAGGCTGGGCCACGCCAA
GCCCGATATCACCTTGCGGATTTATGCCCACTTGTTCAGAAAGGACGACAGCAAGGCTGCGGCGGCGATCAATGCGGCTT
TCAATGGTTAG

Upstream 100 bases:

>100_bases
TCGCTCAAAACAGAACTTACAGTCGCTTTCGCGTGGACATATCAGTTCTCGGTCAAACGCTTCAAGAGATCGCCACCCTC
CTCGCAAAGGAAGTGGCGAA

Downstream 100 bases:

>100_bases
GGTGCCAATCCGGTGCCAACTTCACAGTTTGTTCTTCCGGAGTTCCGCCTAAGTTATTGATTTCGCTACACGGAAGGGTG
GCCGAGTGGTTTAAGGCACC

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MKGHIQQRGKTSWRLKFDAGRDEKTGKRNVQFVTFRGTKRQAQTKLAELIASVAQSKYIEPSKITVADYVRGRVDQWEDS
GDISARTAARYRELTENQIVPHLGAKLIQKLRTDDIEEWHTTLRSGGRAKGKGGLAPRTIGHAHRVLGKAMRDALRFEKI
TKNVTALQAAPKVDDDEMAIVQDVPALIDRLRHHRLFPLAMIALFTGMRIGEVLALRWGRVDLDRKVIEVREAIEETKAH
GIRIKPPKTKAGRRDVTLPDVLVDVLRDYRKTHLERRVALGLGKLPDDALLFAGPGGSLPSQKYYSKAWSDLDVGVPFHG
LRHTHASQLIDAGVDIVTISKRLGHAKPDITLRIYAHLFRKDDSKAAAAINAAFNG

Sequences:

>Translated_376_residues
MKGHIQQRGKTSWRLKFDAGRDEKTGKRNVQFVTFRGTKRQAQTKLAELIASVAQSKYIEPSKITVADYVRGRVDQWEDS
GDISARTAARYRELTENQIVPHLGAKLIQKLRTDDIEEWHTTLRSGGRAKGKGGLAPRTIGHAHRVLGKAMRDALRFEKI
TKNVTALQAAPKVDDDEMAIVQDVPALIDRLRHHRLFPLAMIALFTGMRIGEVLALRWGRVDLDRKVIEVREAIEETKAH
GIRIKPPKTKAGRRDVTLPDVLVDVLRDYRKTHLERRVALGLGKLPDDALLFAGPGGSLPSQKYYSKAWSDLDVGVPFHG
LRHTHASQLIDAGVDIVTISKRLGHAKPDITLRIYAHLFRKDDSKAAAAINAAFNG
>Mature_376_residues
MKGHIQQRGKTSWRLKFDAGRDEKTGKRNVQFVTFRGTKRQAQTKLAELIASVAQSKYIEPSKITVADYVRGRVDQWEDS
GDISARTAARYRELTENQIVPHLGAKLIQKLRTDDIEEWHTTLRSGGRAKGKGGLAPRTIGHAHRVLGKAMRDALRFEKI
TKNVTALQAAPKVDDDEMAIVQDVPALIDRLRHHRLFPLAMIALFTGMRIGEVLALRWGRVDLDRKVIEVREAIEETKAH
GIRIKPPKTKAGRRDVTLPDVLVDVLRDYRKTHLERRVALGLGKLPDDALLFAGPGGSLPSQKYYSKAWSDLDVGVPFHG
LRHTHASQLIDAGVDIVTISKRLGHAKPDITLRIYAHLFRKDDSKAAAAINAAFNG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42029; Mature: 42029

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGHIQQRGKTSWRLKFDAGRDEKTGKRNVQFVTFRGTKRQAQTKLAELIASVAQSKYIE
CCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
PSKITVADYVRGRVDQWEDSGDISARTAARYRELTENQIVPHLGAKLIQKLRTDDIEEWH
CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
TTLRSGGRAKGKGGLAPRTIGHAHRVLGKAMRDALRFEKITKNVTALQAAPKVDDDEMAI
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
VQDVPALIDRLRHHRLFPLAMIALFTGMRIGEVLALRWGRVDLDRKVIEVREAIEETKAH
HHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GIRIKPPKTKAGRRDVTLPDVLVDVLRDYRKTHLERRVALGLGKLPDDALLFAGPGGSLP
CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
SQKYYSKAWSDLDVGVPFHGLRHTHASQLIDAGVDIVTISKRLGHAKPDITLRIYAHLFR
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCEEHHHHHHHHH
KDDSKAAAAINAAFNG
CCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKGHIQQRGKTSWRLKFDAGRDEKTGKRNVQFVTFRGTKRQAQTKLAELIASVAQSKYIE
CCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC
PSKITVADYVRGRVDQWEDSGDISARTAARYRELTENQIVPHLGAKLIQKLRTDDIEEWH
CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
TTLRSGGRAKGKGGLAPRTIGHAHRVLGKAMRDALRFEKITKNVTALQAAPKVDDDEMAI
HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
VQDVPALIDRLRHHRLFPLAMIALFTGMRIGEVLALRWGRVDLDRKVIEVREAIEETKAH
HHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
GIRIKPPKTKAGRRDVTLPDVLVDVLRDYRKTHLERRVALGLGKLPDDALLFAGPGGSLP
CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
SQKYYSKAWSDLDVGVPFHGLRHTHASQLIDAGVDIVTISKRLGHAKPDITLRIYAHLFR
CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCEEHHHHHHHHH
KDDSKAAAAINAAFNG
CCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]