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The map label for this gene is exbD [H]

Identifier: 75675460

GI number: 75675460

Start: 1400563

End: 1401033

Strand: Direct

Name: exbD [H]

Synonym: Nwi_1268

Alternate gene names: 75675460

Gene position: 1400563-1401033 (Clockwise)

Preceding gene: 75675459

Following gene: 75675461

Centisome position: 41.17

GC content: 64.76

Gene sequence:

>471_bases
ATGGGCGCATCGATCGCGGAAGGCGGCTTCGACGACGACGAGGAGTACGGCGAAGCCCACGAGATCAACGTCACGCCGTT
CATCGACGTGATCCTGGTTCTTCTGATCATCTTCATGGTGGCCGCGCCGCTGTCGACCGTCGATCTTCCGGTCAACCTGC
CGACATCGAGCGCGACGCCGCAGAAGAAGCCGGACAAGCCGACCTATGTCAGCATCAAGGCCGATCTCGCGGTGGCGATC
GGCGAGACGCTGGTCAAGCGGGTCGACCTGGTGCGGACGCTGGAGACCACGCCGAACATGACGAAGGAGAGCTTCATCTT
TCTGCGCGCCGATCGCGCGGTGCCCTATGGCGACCTGATGGACGTGCTGGAGATCCTGCGTACCGGCGGCTACGCGAAGA
TCAAGCTGGTGGCGCTGGAGGGCGTTCCCGACGCCCGGTCGGTTCCGGCGGCGAACACGGCGGGGCGTTGA

Upstream 100 bases:

>100_bases
GAACTGGTCGGGCGCGCCTCGGGAGCGGCCGGCCGGCTGCTGTCGCGCGATCTGGACCGCACCCACGGTTCCCTCACCTC
GCGCGCGGCGGAGTAGGCCG

Downstream 100 bases:

>100_bases
GATGCCTGAGATTGTCGAACAGCCACCGTCCGGCCGGCTCTGGCTTTCCGCCGCCGCCGCCGCGCTTGCGATCCATCTCG
GCTGCGTGGCGCTGGCGCTG

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MGASIAEGGFDDDEEYGEAHEINVTPFIDVILVLLIIFMVAAPLSTVDLPVNLPTSSATPQKKPDKPTYVSIKADLAVAI
GETLVKRVDLVRTLETTPNMTKESFIFLRADRAVPYGDLMDVLEILRTGGYAKIKLVALEGVPDARSVPAANTAGR

Sequences:

>Translated_156_residues
MGASIAEGGFDDDEEYGEAHEINVTPFIDVILVLLIIFMVAAPLSTVDLPVNLPTSSATPQKKPDKPTYVSIKADLAVAI
GETLVKRVDLVRTLETTPNMTKESFIFLRADRAVPYGDLMDVLEILRTGGYAKIKLVALEGVPDARSVPAANTAGR
>Mature_155_residues
GASIAEGGFDDDEEYGEAHEINVTPFIDVILVLLIIFMVAAPLSTVDLPVNLPTSSATPQKKPDKPTYVSIKADLAVAIG
ETLVKRVDLVRTLETTPNMTKESFIFLRADRAVPYGDLMDVLEILRTGGYAKIKLVALEGVPDARSVPAANTAGR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=52.755905511811, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16756; Mature: 16624

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGASIAEGGFDDDEEYGEAHEINVTPFIDVILVLLIIFMVAAPLSTVDLPVNLPTSSATP
CCCCCCCCCCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
QKKPDKPTYVSIKADLAVAIGETLVKRVDLVRTLETTPNMTKESFIFLRADRAVPYGDLM
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHH
DVLEILRTGGYAKIKLVALEGVPDARSVPAANTAGR
HHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GASIAEGGFDDDEEYGEAHEINVTPFIDVILVLLIIFMVAAPLSTVDLPVNLPTSSATP
CCCCCCCCCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCC
QKKPDKPTYVSIKADLAVAIGETLVKRVDLVRTLETTPNMTKESFIFLRADRAVPYGDLM
CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHH
DVLEILRTGGYAKIKLVALEGVPDARSVPAANTAGR
HHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]