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The map label for this gene is fliR [H]

Identifier: 75675329

GI number: 75675329

Start: 1246109

End: 1246879

Strand: Direct

Name: fliR [H]

Synonym: Nwi_1136

Alternate gene names: 75675329

Gene position: 1246109-1246879 (Clockwise)

Preceding gene: 75675328

Following gene: 75675330

Centisome position: 36.63

GC content: 62.26

Gene sequence:

>771_bases
ATGCGCATCGATATCTCGCTTCTGCCCGCCCTTGGCGCCGCCTTCATGCTGGTCTTCGCCCGCGTCGGCGCGATGGTGAT
GCTGTTGCCCGGCTTCGGCGAGGGCTACATTCCGGTGCGGGTGAAACTCGCCATCGCTCTGCTTCTGACTTTCATCATCC
TGCCGCTGCATCGCGCCGCCTATCACGTCGACATGCAGTCGGTCGCACCGCTGGCGGTCCTGCTGGTGCATGAGATCATC
ATCGGCGTGGTGCTGGGCGCTACGGCGCGCGTCACGCTCGCGGCCCTGCATGTGGCGGGCTCGGTCATCGCCCAGCAGCT
CGGGCTTGGATTTGTGACATCGGTGGATCCGACGCAGGGCCAGCAAGGCGCGTTGATGGGCAACTTCCTGACCCTTCTCG
GAATCGCGCTGCTGTTCGCGACCGACACCCACTATCTGGTCATCGCCGCGTTGAATGACAGTTACAAGATATTCTCGCCG
GGCGAACTGATGCCGAGCGGCGACGTGGCGGCGCTGGCGACGCGCGCTTTTGCCGGCGCCTTCAAGATCGGCCTGCAACT
GTCGGCTCCGTTTCTGGTGTTCGGGCTGGTCTTCAATATCGGGCTTGGCGTGCTCGCGCGGCTGATGCCACAGATGCAGG
TTTATTTCGTCGGCGTGCCGCTCTCGATTTTCATCGGCTTCATGATCTTCGCCGCCGTGCTGGCGTCCATGATGGGAACC
TACATGGATTATCTGATCGGCGTGATGCAAGACCTGACGTCGTCGAACTGA

Upstream 100 bases:

>100_bases
ACGCTGGTTCTGGCGCTGCCGTTCATGGCCGACGCGCTGCACGCCGAAATGCTGCGGATTTCATCGCGAATCATCGGCGG
CTGATGCATGGTTGCGCGAG

Downstream 100 bases:

>100_bases
GAACCTGCGATGGCCGACGAGAGCGACGATACGGAGAAAACAGAAGATCCGACGCAAAAGCGCCTTGACGATGCGCTGGA
GCGCGGCGATGTCGCCAAGA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MRIDISLLPALGAAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAAYHVDMQSVAPLAVLLVHEII
IGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQGQQGALMGNFLTLLGIALLFATDTHYLVIAALNDSYKIFSP
GELMPSGDVAALATRAFAGAFKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGT
YMDYLIGVMQDLTSSN

Sequences:

>Translated_256_residues
MRIDISLLPALGAAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAAYHVDMQSVAPLAVLLVHEII
IGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQGQQGALMGNFLTLLGIALLFATDTHYLVIAALNDSYKIFSP
GELMPSGDVAALATRAFAGAFKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGT
YMDYLIGVMQDLTSSN
>Mature_256_residues
MRIDISLLPALGAAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAAYHVDMQSVAPLAVLLVHEII
IGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQGQQGALMGNFLTLLGIALLFATDTHYLVIAALNDSYKIFSP
GELMPSGDVAALATRAFAGAFKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGT
YMDYLIGVMQDLTSSN

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=233, Percent_Identity=32.1888412017167, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27073; Mature: 27073

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIDISLLPALGAAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAA
CEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YHVDMQSVAPLAVLLVHEIIIGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQG
HHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
QQGALMGNFLTLLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGA
CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHH
FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
YMDYLIGVMQDLTSSN
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIDISLLPALGAAFMLVFARVGAMVMLLPGFGEGYIPVRVKLAIALLLTFIILPLHRAA
CEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YHVDMQSVAPLAVLLVHEIIIGVVLGATARVTLAALHVAGSVIAQQLGLGFVTSVDPTQG
HHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
QQGALMGNFLTLLGIALLFATDTHYLVIAALNDSYKIFSPGELMPSGDVAALATRAFAGA
CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHHH
FKIGLQLSAPFLVFGLVFNIGLGVLARLMPQMQVYFVGVPLSIFIGFMIFAAVLASMMGT
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHH
YMDYLIGVMQDLTSSN
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]