| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is flgE [H]
Identifier: 75675292
GI number: 75675292
Start: 1207965
End: 1209806
Strand: Direct
Name: flgE [H]
Synonym: Nwi_1099
Alternate gene names: 75675292
Gene position: 1207965-1209806 (Clockwise)
Preceding gene: 75675291
Following gene: 75675293
Centisome position: 35.51
GC content: 64.98
Gene sequence:
>1842_bases ATGGGTATTTTCGACGCATTGAATACTTCGGTCGGCGGCTTGCAGGCGCAGTCCTTCGCACTTCAAAATATATCCGGCAA CATCGCGAACGCCCAGACCACCGGCTACAAGGGCATCACCACGGCCTTCAGTGACCTGATCCCCGACTCGACTGCCCCCA ATCGTCAGGCCGCCGGCGGCGTGACAGCCTATGCGACGGCGACGATCAGCAGCCAGGGAACGGTGTCGGCCTCGACGGTC GGCACCTACATGGCGATAACCGGCGACGGCTTCTTCAACGTCCAGGCGCCGACGGGGCGGATGGACAACCAGCCGCAGTT TTCCGGCGTGACCTACTACACCCGGCGCGGCGATTTTCAGGTCGATGCCGGCGGCCATCTGGTCAACAGCGCAGGCTATT ACCTGATGGGCGTGCCGGTCGACCCCAAGACCGGCAACCCGCTCGGCAATGTGCCGCAGGTGCTGAAATTCCAGAACAAC TTCGTACCGGCCCAAGCCACGACGACGGTGCAATACGCCGCCAATCTTCCATCGGTGCCGAGGACGCTGTCGAGTTCGAC CGCGCCCGCCGGGACCATTACGGCGGCCGGCGGATTGAACCCGTCCGACTTCACGACCAATTTCAATCCGCTCGTGGTCG GCACGCCGGCTCCGCCCTATACCGACAACATCACCACGGGATCGGCGGCGACCAACCAGCAGACGCCTTCGGGTCCCATC ACCAGCGCGACGCTGTTGTCAGGCGTCGCGCCGAGCGATTCGTTGCCGGGCGGATTCGCGGTCGGCGACACCATCACCGT GAACGGCACCACGATCACCTTCACCGACGCCGGCACCGCGCTGCCGCCGGGCGTGCAGGACGCGACCCATGTCCGCATCG ACGATACCGTCGGCGACCTCCTCGGCAGGATCGGCGCGATCACGGGCGCCGCTCCGACAATCGATGCCGGCACCGGCGCG ATCACCCTGCATACCGGCACCGCGCAGGATCTGACGGTCACGAGCGCCTCCGCCGGCTGGACGGCGATGGGCTTCGGCGC GATGATCAACATCGCGCGCGGCGGCGGCGGCACGCCCGGCGCGGGCGTCGTGATCGCCAACGACCAGACCATCTTCCAGC AGCAATCGATCAGCGGCGGCGCGGTCACGGCCTATGACGCGACCGGGACGGCGGTGAACCTGCAACTGCGCTGGGCCAAG ACCGACAGCGCCTCGCTCGGCGCCGGGCATTCCGACACGTGGAACCTGTTCTATCAGGCCGATCCGAACGCCACTGGCAC GCAGGCGGCGTGGATCAATGTCGGCACCAACTTCACCTTCGGCATCAACGGCCAGCTTTCGAGTCCGGTCGGATCGTCGA TCACCATTCCCGGCGTCAGCGTGGGATCGCAGTCTCTCGGCAACCTCACGCTGAATATCGGCTCGGGCGGTCTGACCCAG TATGCCAGCAGCGGCGGCAACGCCACCATCAATGCGATCAACCAGAACGGCTACGCCGCCGGACAGTTGCAATCGGTCGC CGTCAACAATGACGGCATCGTGGTCGGCACCTTCTCGAACGGACAGAACCTGTCTCTCGCGCAGGTGTCGCTGTCGCACT TCAACGGAACCAACTACCTCAAGGCGCTTGATGGCGGCGCTTATGCGGTGACCAACGAGTCGGGGTCCGCGATCGCGGGC GCGTCGGGGCGCATCAGCGGCTCGTCGCTCGAAGGCTCCAACGCCGACATCGCCGATGAGTTCACCAAGCTGATCGTGAC GCAGCAGGCTTACTCGGCGAACACCAAGGTCATCACCACCGCGAACAGCATGGTTCAGGATCTGCTGAACGTGTTGCGCT AA
Upstream 100 bases:
>100_bases GTCTCTTTGCTGTTGGCATGGAGCTTGCGACGCCGTCTGCCGACCGCGGCGAGGTTTGACCTTGCGTTTTGGGCCGCCCG GATCGAGTTGGAGACGACGT
Downstream 100 bases:
>100_bases TCACGGGCGTGGATTGATCCGGCTTTGAGGCGGGCAAGAAGATGAGTTTGAGTTCGGCCCTCTCGATCGCAATGTCCGGC CTGCGCGCCAACCAGGCCGC
Product: flagellar basal body rod protein, FlaE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 613; Mature: 612
Protein sequence:
>613_residues MGIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGGVTAYATATISSQGTVSASTV GTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQVDAGGHLVNSAGYYLMGVPVDPKTGNPLGNVPQVLKFQNN FVPAQATTTVQYAANLPSVPRTLSSSTAPAGTITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNITTGSAATNQQTPSGPI TSATLLSGVAPSDSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDLLGRIGAITGAAPTIDAGTGA ITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPGAGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAK TDSASLGAGHSDTWNLFYQADPNATGTQAAWINVGTNFTFGINGQLSSPVGSSITIPGVSVGSQSLGNLTLNIGSGGLTQ YASSGGNATINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYLKALDGGAYAVTNESGSAIAG ASGRISGSSLEGSNADIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVLR
Sequences:
>Translated_613_residues MGIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGGVTAYATATISSQGTVSASTV GTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQVDAGGHLVNSAGYYLMGVPVDPKTGNPLGNVPQVLKFQNN FVPAQATTTVQYAANLPSVPRTLSSSTAPAGTITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNITTGSAATNQQTPSGPI TSATLLSGVAPSDSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDLLGRIGAITGAAPTIDAGTGA ITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPGAGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAK TDSASLGAGHSDTWNLFYQADPNATGTQAAWINVGTNFTFGINGQLSSPVGSSITIPGVSVGSQSLGNLTLNIGSGGLTQ YASSGGNATINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYLKALDGGAYAVTNESGSAIAG ASGRISGSSLEGSNADIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVLR >Mature_612_residues GIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGGVTAYATATISSQGTVSASTVG TYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQVDAGGHLVNSAGYYLMGVPVDPKTGNPLGNVPQVLKFQNNF VPAQATTTVQYAANLPSVPRTLSSSTAPAGTITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNITTGSAATNQQTPSGPIT SATLLSGVAPSDSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDLLGRIGAITGAAPTIDAGTGAI TLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPGAGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAKT DSASLGAGHSDTWNLFYQADPNATGTQAAWINVGTNFTFGINGQLSSPVGSSITIPGVSVGSQSLGNLTLNIGSGGLTQY ASSGGNATINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYLKALDGGAYAVTNESGSAIAGA SGRISGSSLEGSNADIADEFTKLIVTQQAYSANTKVITTANSMVQDLLNVLR
Specific function: Unknown
COG id: COG1749
COG function: function code N; Flagellar hook protein FlgE
Gene ontology:
Cell location: Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787316, Length=239, Percent_Identity=28.0334728033473, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1787318, Length=134, Percent_Identity=34.3283582089552, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR019776 - InterPro: IPR020013 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 61633; Mature: 61502
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGG CCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC VTAYATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQ EEEEEEEEECCCCCEEEEECEEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEECCCEE VDAGGHLVNSAGYYLMGVPVDPKTGNPLGNVPQVLKFQNNFVPAQATTTVQYAANLPSVP ECCCCEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCC RTLSSSTAPAGTITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNITTGSAATNQQTPSGPI HHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC TSATLLSGVAPSDSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDL CHHHHHHCCCCCCCCCCCEEECCEEEECCCEEEEECCCCCCCCCCCCCEEEEECHHHHHH LGRIGAITGAAPTIDAGTGAITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPG HHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCEEECCCEEEEEECCCCCCCC AGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNLFYQA CCEEEECCCCEEHHHCCCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEE DPNATGTQAAWINVGTNFTFGINGQLSSPVGSSITIPGVSVGSQSLGNLTLNIGSGGLTQ CCCCCCCEEEEEEECCEEEEEECCEECCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHH YASSGGNATINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYL HHCCCCCEEEEEECCCCEECCEEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCEE KALDGGAYAVTNESGSAIAGASGRISGSSLEGSNADIADEFTKLIVTQQAYSANTKVITT EEECCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHEEHHHHCCCCEEEEE ANSMVQDLLNVLR HHHHHHHHHHHHC >Mature Secondary Structure GIFDALNTSVGGLQAQSFALQNISGNIANAQTTGYKGITTAFSDLIPDSTAPNRQAAGG CCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC VTAYATATISSQGTVSASTVGTYMAITGDGFFNVQAPTGRMDNQPQFSGVTYYTRRGDFQ EEEEEEEEECCCCCEEEEECEEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEECCCEE VDAGGHLVNSAGYYLMGVPVDPKTGNPLGNVPQVLKFQNNFVPAQATTTVQYAANLPSVP ECCCCEEEECCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCC RTLSSSTAPAGTITAAGGLNPSDFTTNFNPLVVGTPAPPYTDNITTGSAATNQQTPSGPI HHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC TSATLLSGVAPSDSLPGGFAVGDTITVNGTTITFTDAGTALPPGVQDATHVRIDDTVGDL CHHHHHHCCCCCCCCCCCEEECCEEEECCCEEEEECCCCCCCCCCCCCEEEEECHHHHHH LGRIGAITGAAPTIDAGTGAITLHTGTAQDLTVTSASAGWTAMGFGAMINIARGGGGTPG HHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCEEECCCEEEEEECCCCCCCC AGVVIANDQTIFQQQSISGGAVTAYDATGTAVNLQLRWAKTDSASLGAGHSDTWNLFYQA CCEEEECCCCEEHHHCCCCCEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEE DPNATGTQAAWINVGTNFTFGINGQLSSPVGSSITIPGVSVGSQSLGNLTLNIGSGGLTQ CCCCCCCEEEEEEECCEEEEEECCEECCCCCCEEEECCCCCCCCCCCEEEEEECCCCHHH YASSGGNATINAINQNGYAAGQLQSVAVNNDGIVVGTFSNGQNLSLAQVSLSHFNGTNYL HHCCCCCEEEEEECCCCEECCEEEEEEECCCCEEEEECCCCCCEEEEEEEEECCCCCCEE KALDGGAYAVTNESGSAIAGASGRISGSSLEGSNADIADEFTKLIVTQQAYSANTKVITT EEECCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHEEHHHHCCCCEEEEE ANSMVQDLLNVLR HHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647; 4078896 [H]