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The map label for this gene is yagA [H]

Identifier: 75675065

GI number: 75675065

Start: 941240

End: 942301

Strand: Direct

Name: yagA [H]

Synonym: Nwi_0870

Alternate gene names: 75675065

Gene position: 941240-942301 (Clockwise)

Preceding gene: 75675064

Following gene: 75675066

Centisome position: 27.67

GC content: 59.6

Gene sequence:

>1062_bases
ATGAGGTATCCTGCGTCCGAGAAAGCCGAGATCATCGCGTTGGTGGAGCAGTCGCATTTGCCGGCCAAACGCACGCTGGA
CAAGCTCGGCATCCCCCGCGCCACGTTTTATAGATGGTACGATCGCTACCGCGCGGGCGGCATTGAGGCCCTGGCAGATC
ACCGCTCTCGACCGGATCGGGTCTGGAATCGTATCCCGGATGACGTCCGCGGCCAGATCATCGACCTGGCATTGGAGCTT
CCGGAACTATCGCCGCGAGAGCTCGCCGTGCGGTTTACCGACGAGAGAAAGTACTTTGTCTCGGAGGCTTCGGTCTATCG
GCTGCTGAAGGCGCACGACCTCATCACCAGTCCGGCCTATGTAGTGATCAAGGCGGCGAACGAGTTCAAGGACAAGACCA
CCGCCGCCAACCAGCTCTGGCAGACCGACTTCACCTACCTGAAGATCACCGGCTGGGGCTGGTACTATCTATCGACGGTG
CTCGACGACTTCTCGCGCTACATCGTCGCCTGGAGGTTAGGTCCCACGATGTGTGCCTCCGACGTCACGGCTACGCTCGA
TCAGGCACTGGCCGCCTCTGGTCTGGATCACGTCAGCGTCAGGCAGCGGCCCCGGCTTCTCAGCGACAATGGTTCGAGTT
ACGTCGCGGATGATCTGGCCACGTGGCTCAGGGCCAAGGACATGCAGCATGTGCGCGGAGCGCCGTATCATCCTCAGACT
CAGGGCAAGATCGAGCGTTGGCATCAAACGTTGAAGAACCGCATCCTGCTTGAGAACTACTATTTACCGGACGACCTCAA
ACGTCAGGTCGCCGCGTTCGTCGAACACTATAATCATGACCGCTACCACGAGAGCATCGGCAACGTTACACCTGCCGACG
TCTACTTCTGTCCGCCGTCAGGGCTCTTGAGACAGTTTAGGGGTTTTCGGGAAGGGAGGATTTCTGGATCATCGCAGCCA
ATTTGGAGCGCAGATGAGACAGAAATCCGGGCCGGAGAAAGCACCGGCAGAGCAGGTCGTGAAGGACATCCGCCGGGCAA
CGCGCCGGCAGTTCTCGGCTGA

Upstream 100 bases:

>100_bases
TTCGTCGGGAAGCCTCGGCGTTGAAGGAAGTCGTCGCCGATCTCACCCTGGAGAACCGTCTGCTAAAAAAAAGCATGAAC
GGGGATGGGGAGAACGAGGC

Downstream 100 bases:

>100_bases
AGAGAAGATCCGCATCGTGCTGGAAGGCGTGCGCGGCGAGGAGAGCATCGCCGAGCTGTGTCGGCGCGAGGGGATCGCCT
CGTCGATGTATTACGGCTGG

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRGQIIDLALEL
PELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKDKTTAANQLWQTDFTYLKITGWGWYYLSTV
LDDFSRYIVAWRLGPTMCASDVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQT
QGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFCPPSGLLRQFRGFREGRISGSSQP
IWSADETEIRAGESTGRAGREGHPPGNAPAVLG

Sequences:

>Translated_353_residues
MRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRGQIIDLALEL
PELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKDKTTAANQLWQTDFTYLKITGWGWYYLSTV
LDDFSRYIVAWRLGPTMCASDVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQT
QGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFCPPSGLLRQFRGFREGRISGSSQP
IWSADETEIRAGESTGRAGREGHPPGNAPAVLG
>Mature_353_residues
MRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRGQIIDLALEL
PELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKDKTTAANQLWQTDFTYLKITGWGWYYLSTV
LDDFSRYIVAWRLGPTMCASDVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQT
QGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFCPPSGLLRQFRGFREGRISGSSQP
IWSADETEIRAGESTGRAGREGHPPGNAPAVLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=314, Percent_Identity=28.9808917197452, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI1788405, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787263, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786753, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786570, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786490, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 40218; Mature: 40218

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDR
CCCCCCCCHHEEEEHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHH
VWNRIPDDVRGQIIDLALELPELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAY
HHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCE
VVIKAANEFKDKTTAANQLWQTDFTYLKITGWGWYYLSTVLDDFSRYIVAWRLGPTMCAS
EEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHEEEEECCCHHHHH
DVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQT
HHHHHHHHHHHHCCCCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
QGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFCPPS
CHHHHHHHHHHHHCEEHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCH
GLLRQFRGFREGRISGSSQPIWSADETEIRAGESTGRAGREGHPPGNAPAVLG
HHHHHHHCCHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDR
CCCCCCCCHHEEEEHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHH
VWNRIPDDVRGQIIDLALELPELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAY
HHHHCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCE
VVIKAANEFKDKTTAANQLWQTDFTYLKITGWGWYYLSTVLDDFSRYIVAWRLGPTMCAS
EEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHEEEEECCCHHHHH
DVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQT
HHHHHHHHHHHHCCCCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
QGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFCPPS
CHHHHHHHHHHHHCEEHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCH
GLLRQFRGFREGRISGSSQPIWSADETEIRAGESTGRAGREGHPPGNAPAVLG
HHHHHHHCCHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]