Click here to switch to the map view.

The map label for this gene is traF [H]

Identifier: 75675044

GI number: 75675044

Start: 925734

End: 926294

Strand: Direct

Name: traF [H]

Synonym: Nwi_0849

Alternate gene names: 75675044

Gene position: 925734-926294 (Clockwise)

Preceding gene: 75675043

Following gene: 75675045

Centisome position: 27.21

GC content: 68.45

Gene sequence:

>561_bases
ATGACCGCGCGCCGCAGGACGCTGCTCGCAATGCTCACGGGTGCGGCGCTGATCGTCGCGCCGGCCTGGAGCCGCCCCGA
ACTCCGCTTCATCTGGAACGCATCCGCCAGCGTGCCGATCGGTCTCTATCGCATCGTGCCCGGCAATCATGTCGACGTCA
CCGATCTCGCCGTCGTCATGCCGCCCGCCGAGCTGGCGGCATTCCTCGACGAGCGCGGCTACCTGCCGCGCGGCCTGCCG
CTCATCAAGCGCGTGCTGGCGCTCGGCGGTACGAGAATCTGCCGGCGCGACAGCGCCATTATCGCCTATGACGGAATCTA
CGGGCAGGCGCTCGCGCGCGATACGCGCGGCCGACCGCTGCCCGACTGGCAAGGCTGCCGCACGCTCCATGACGGCGAAG
CCTTCTTCATGAATTGGGACAGTCCCGACAGCTTCGACAGCCGCTATTTCGGGCCGCTTCCGATCAGCACCATCGTCGGT
CGCGCCATTCCCATCTGGACCACCGACGGCACCGATCCGGCCGCGGAATCCCTCCGCGCGCCGGTCTCCGACGAGCCGTG
A

Upstream 100 bases:

>100_bases
ACTGGCGGCATCTCAACCATCGCATCGGCGTCAACGAGCCGTTCCGCATCTACAGCCATGAGCAGCACCACGCCTGGCTG
TTGCGGCGGGAGGTGTCGCG

Downstream 100 bases:

>100_bases
CGGCTCGCTTCTCCAACCAGATGAGGATATCGCCATGACGCAGATCGGCACGTTCACGAAGACCAAGACCGGCTTCAGCG
GTCGCCTCCGCACGCTCGCG

Product: conjugal transfer protein precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MTARRRTLLAMLTGAALIVAPAWSRPELRFIWNASASVPIGLYRIVPGNHVDVTDLAVVMPPAELAAFLDERGYLPRGLP
LIKRVLALGGTRICRRDSAIIAYDGIYGQALARDTRGRPLPDWQGCRTLHDGEAFFMNWDSPDSFDSRYFGPLPISTIVG
RAIPIWTTDGTDPAAESLRAPVSDEP

Sequences:

>Translated_186_residues
MTARRRTLLAMLTGAALIVAPAWSRPELRFIWNASASVPIGLYRIVPGNHVDVTDLAVVMPPAELAAFLDERGYLPRGLP
LIKRVLALGGTRICRRDSAIIAYDGIYGQALARDTRGRPLPDWQGCRTLHDGEAFFMNWDSPDSFDSRYFGPLPISTIVG
RAIPIWTTDGTDPAAESLRAPVSDEP
>Mature_185_residues
TARRRTLLAMLTGAALIVAPAWSRPELRFIWNASASVPIGLYRIVPGNHVDVTDLAVVMPPAELAAFLDERGYLPRGLPL
IKRVLALGGTRICRRDSAIIAYDGIYGQALARDTRGRPLPDWQGCRTLHDGEAFFMNWDSPDSFDSRYFGPLPISTIVGR
AIPIWTTDGTDPAAESLRAPVSDEP

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 20400; Mature: 20268

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARRRTLLAMLTGAALIVAPAWSRPELRFIWNASASVPIGLYRIVPGNHVDVTDLAVVM
CCCHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHEEEEE
PPAELAAFLDERGYLPRGLPLIKRVLALGGTRICRRDSAIIAYDGIYGQALARDTRGRPL
CHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCHHHHHHHCCCCCCC
PDWQGCRTLHDGEAFFMNWDSPDSFDSRYFGPLPISTIVGRAIPIWTTDGTDPAAESLRA
CCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHCCEEEEEECCCCCHHHHHHCC
PVSDEP
CCCCCC
>Mature Secondary Structure 
TARRRTLLAMLTGAALIVAPAWSRPELRFIWNASASVPIGLYRIVPGNHVDVTDLAVVM
CCHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHEEEEE
PPAELAAFLDERGYLPRGLPLIKRVLALGGTRICRRDSAIIAYDGIYGQALARDTRGRPL
CHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCHHHHHHHCCCCCCC
PDWQGCRTLHDGEAFFMNWDSPDSFDSRYFGPLPISTIVGRAIPIWTTDGTDPAAESLRA
CCCCCCCEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHCCEEEEEECCCCCHHHHHHCC
PVSDEP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194 [H]