| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is livF [H]
Identifier: 75674866
GI number: 75674866
Start: 750309
End: 751013
Strand: Direct
Name: livF [H]
Synonym: Nwi_0669
Alternate gene names: 75674866
Gene position: 750309-751013 (Clockwise)
Preceding gene: 75674865
Following gene: 75674872
Centisome position: 22.05
GC content: 56.03
Gene sequence:
>705_bases ATGTTGTCAGTCGCCGATCTGCACGTCAACTATGGCCGCGCTGAGATCCTTCATGGGGTTTCACTTGACGTTGGTGATAA GCCGGTGTCCGTTGTCGGACGCAATGGCATGGGAAAAACCACGTTCTGCTATGCCATCATGGGAATGATACCGGTTCGGA GCGGTTCTATCGCGCTTGATAACGAGCCTCTTGATCGCAAGTCTGCGATGCAGGTCGCCCGGCGTGGAATTGCGATCGTT CCCCAAGGAAGGCGGGTCTTCCCCTCGCTTTCTGTTGACGAACACCTCAAGCTCGCGAGCCGGAGCAGGAAGGCGGCCTG GACTCCAGAACGGATCTACGAGACTTTTCCCCGACTAGCGGAAAGAAGATCGAACGGCGGCGCGCAATTATCGGGGGGCG AGCAGCAGATGCTTGCCATAGCCCGCGCGCTACTGCGCAATCCAAGACTGATCATCATGGACGAACCATCGGAAGGATTG GCTCCCGTGATTGTCGATCAGTTGATCGATACGCTGAGGAAGCTGACACTCGACAAGATCGGTCTTCTGTTGATCGAGCA GAACCTGAGAGTTGCGACTTCCGTTTCCGACACGGTTGCTGTCATGCTGGGCGGAAAAATTGCGGCTACGCTTCCGGCGA AAAGATTGAGTACGGACGAGGCGCTTCAGCGTCGCTACCTTGGCGTAAGTTCGGCTTTACACTAG
Upstream 100 bases:
>100_bases TCACGGTGATGAAGGACGGAGCGGTCGCGATCGAGCGGACACCTGACAAGGTCGAGCGCGATCCCGCTGTGCAGGCGATT TATCTGGGCGAGGCTGCGTG
Downstream 100 bases:
>100_bases AGCATGACCCGATCAAGTTGAATCGGACCATGCTTTAGAAATGGTTGTCTGGTCGCATTTTCTTGCGGCGAACCGGTATC CACTTCGCCGGAAAATGCTC
Product: ABC-type branched-chain amino acid transport systems ATPase component
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MLSVADLHVNYGRAEILHGVSLDVGDKPVSVVGRNGMGKTTFCYAIMGMIPVRSGSIALDNEPLDRKSAMQVARRGIAIV PQGRRVFPSLSVDEHLKLASRSRKAAWTPERIYETFPRLAERRSNGGAQLSGGEQQMLAIARALLRNPRLIIMDEPSEGL APVIVDQLIDTLRKLTLDKIGLLLIEQNLRVATSVSDTVAVMLGGKIAATLPAKRLSTDEALQRRYLGVSSALH
Sequences:
>Translated_234_residues MLSVADLHVNYGRAEILHGVSLDVGDKPVSVVGRNGMGKTTFCYAIMGMIPVRSGSIALDNEPLDRKSAMQVARRGIAIV PQGRRVFPSLSVDEHLKLASRSRKAAWTPERIYETFPRLAERRSNGGAQLSGGEQQMLAIARALLRNPRLIIMDEPSEGL APVIVDQLIDTLRKLTLDKIGLLLIEQNLRVATSVSDTVAVMLGGKIAATLPAKRLSTDEALQRRYLGVSSALH >Mature_234_residues MLSVADLHVNYGRAEILHGVSLDVGDKPVSVVGRNGMGKTTFCYAIMGMIPVRSGSIALDNEPLDRKSAMQVARRGIAIV PQGRRVFPSLSVDEHLKLASRSRKAAWTPERIYETFPRLAERRSNGGAQLSGGEQQMLAIARALLRNPRLIIMDEPSEGL APVIVDQLIDTLRKLTLDKIGLLLIEQNLRVATSVSDTVAVMLGGKIAATLPAKRLSTDEALQRRYLGVSSALH
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI31657092, Length=193, Percent_Identity=26.4248704663212, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI45446740, Length=201, Percent_Identity=29.3532338308458, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI47078218, Length=201, Percent_Identity=29.3532338308458, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI153792144, Length=203, Percent_Identity=25.1231527093596, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI27881501, Length=182, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI30795238, Length=182, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI150417984, Length=200, Percent_Identity=30.5, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27477115, Length=202, Percent_Identity=25.7425742574257, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI27436953, Length=230, Percent_Identity=24.7826086956522, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4505771, Length=175, Percent_Identity=30.8571428571429, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961252, Length=175, Percent_Identity=30.8571428571429, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=175, Percent_Identity=30.8571428571429, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI148612844, Length=209, Percent_Identity=32.0574162679426, Blast_Score=69, Evalue=2e-12, Organism=Homo sapiens, GI255708477, Length=209, Percent_Identity=32.0574162679426, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI21536376, Length=199, Percent_Identity=25.1256281407035, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI105990541, Length=186, Percent_Identity=24.7311827956989, Blast_Score=69, Evalue=4e-12, Organism=Escherichia coli, GI87082268, Length=232, Percent_Identity=39.6551724137931, Blast_Score=167, Evalue=4e-43, Organism=Escherichia coli, GI1789593, Length=234, Percent_Identity=30.7692307692308, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787792, Length=225, Percent_Identity=27.1111111111111, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786872, Length=241, Percent_Identity=29.045643153527, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=28.755364806867, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=26.4462809917355, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789864, Length=257, Percent_Identity=28.0155642023346, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1789991, Length=235, Percent_Identity=27.2340425531915, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI48995001, Length=224, Percent_Identity=29.0178571428571, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=25.8064516129032, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI87081834, Length=208, Percent_Identity=28.3653846153846, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1787370, Length=188, Percent_Identity=32.9787234042553, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788472, Length=233, Percent_Identity=26.1802575107296, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=26.7605633802817, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787112, Length=220, Percent_Identity=30, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788761, Length=216, Percent_Identity=29.6296296296296, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787712, Length=205, Percent_Identity=29.7560975609756, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI87082267, Length=208, Percent_Identity=29.8076923076923, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=24.8995983935743, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788506, Length=214, Percent_Identity=28.5046728971963, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87081709, Length=205, Percent_Identity=30.2439024390244, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI145693107, Length=209, Percent_Identity=31.1004784688995, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI48994997, Length=250, Percent_Identity=29.2, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787500, Length=234, Percent_Identity=28.6324786324786, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI48994943, Length=224, Percent_Identity=29.9107142857143, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788644, Length=227, Percent_Identity=26.8722466960352, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=28.0172413793103, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788210, Length=206, Percent_Identity=24.2718446601942, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788165, Length=215, Percent_Identity=28.3720930232558, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790739, Length=245, Percent_Identity=24.8979591836735, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786398, Length=200, Percent_Identity=28.5, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790190, Length=218, Percent_Identity=24.7706422018349, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786654, Length=156, Percent_Identity=31.4102564102564, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1790525, Length=236, Percent_Identity=22.0338983050847, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=29.3577981651376, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788897, Length=196, Percent_Identity=23.9795918367347, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788450, Length=172, Percent_Identity=29.0697674418605, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI87081782, Length=178, Percent_Identity=28.0898876404494, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1786253, Length=242, Percent_Identity=24.3801652892562, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=24.6575342465753, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=25.8536585365854, Blast_Score=60, Evalue=9e-11, Organism=Escherichia coli, GI1786319, Length=222, Percent_Identity=26.1261261261261, Blast_Score=60, Evalue=9e-11, Organism=Escherichia coli, GI1787143, Length=148, Percent_Identity=32.4324324324324, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17565586, Length=179, Percent_Identity=26.8156424581006, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71992285, Length=221, Percent_Identity=28.9592760180996, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI25146777, Length=231, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17541710, Length=189, Percent_Identity=30.1587301587302, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17510237, Length=200, Percent_Identity=28.5, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI193211017, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI212646699, Length=230, Percent_Identity=26.5217391304348, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996809, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996550, Length=225, Percent_Identity=30.2222222222222, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17558664, Length=173, Percent_Identity=30.0578034682081, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI32566680, Length=176, Percent_Identity=31.8181818181818, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17569081, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI71984940, Length=160, Percent_Identity=32.5, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71988343, Length=182, Percent_Identity=29.1208791208791, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569145, Length=156, Percent_Identity=31.4102564102564, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569143, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=30.635838150289, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17551700, Length=218, Percent_Identity=24.3119266055046, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17551702, Length=218, Percent_Identity=24.3119266055046, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322980, Length=237, Percent_Identity=27.4261603375527, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6321752, Length=229, Percent_Identity=27.5109170305677, Blast_Score=72, Evalue=8e-14, Organism=Saccharomyces cerevisiae, GI6320339, Length=207, Percent_Identity=26.0869565217391, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24643674, Length=213, Percent_Identity=28.6384976525822, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI28574150, Length=212, Percent_Identity=30.188679245283, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI116007328, Length=212, Percent_Identity=30.188679245283, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI221512771, Length=214, Percent_Identity=28.0373831775701, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI24666092, Length=229, Percent_Identity=27.9475982532751, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24648314, Length=213, Percent_Identity=26.7605633802817, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24659289, Length=172, Percent_Identity=28.4883720930233, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357907, Length=160, Percent_Identity=33.125, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI17136662, Length=173, Percent_Identity=28.3236994219653, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI85726357, Length=158, Percent_Identity=30.379746835443, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25442; Mature: 25442
Theoretical pI: Translated: 10.49; Mature: 10.49
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSVADLHVNYGRAEILHGVSLDVGDKPVSVVGRNGMGKTTFCYAIMGMIPVRSGSIALD CCEEEEEEECCCHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEC NEPLDRKSAMQVARRGIAIVPQGRRVFPSLSVDEHLKLASRSRKAAWTPERIYETFPRLA CCCCCHHHHHHHHHCCEEEECCCCEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ERRSNGGAQLSGGEQQMLAIARALLRNPRLIIMDEPSEGLAPVIVDQLIDTLRKLTLDKI HHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH GLLLIEQNLRVATSVSDTVAVMLGGKIAATLPAKRLSTDEALQRRYLGVSSALH HHEEEECCCEEECCCHHHEEEEECCEEEECCCHHHCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLSVADLHVNYGRAEILHGVSLDVGDKPVSVVGRNGMGKTTFCYAIMGMIPVRSGSIALD CCEEEEEEECCCHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEC NEPLDRKSAMQVARRGIAIVPQGRRVFPSLSVDEHLKLASRSRKAAWTPERIYETFPRLA CCCCCHHHHHHHHHCCEEEECCCCEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ERRSNGGAQLSGGEQQMLAIARALLRNPRLIIMDEPSEGLAPVIVDQLIDTLRKLTLDKI HHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH GLLLIEQNLRVATSVSDTVAVMLGGKIAATLPAKRLSTDEALQRRYLGVSSALH HHEEEECCCEEECCCHHHEEEEECCEEEECCCHHHCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]