BacMap

Definition	Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession	NC_007404
Length	2,909,809

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The map label for this gene is yahD [C]

Identifier: 74318746

GI number: 74318746

Start: 2807609

End: 2808187

Strand: Direct

Name: yahD [C]

Synonym: Tbd_2728

Alternate gene names: 74318746

Gene position: 2807609-2808187 (Clockwise)

Preceding gene: 74318742

Following gene: 74318749

Centisome position: 96.49

GC content: 68.57

Gene sequence:

>579_bases
ATGTTGCAGGAATTGTTTGTTGCCGCGAGTTCGGGCGATGTCGCCCGGATCGAGGCCCTTCTCGCCGCCGGCGCCGATCA
CGCGGCGGCCGACGAGGCCGGTGAAACGGCGCTCATGCACGCCGCTCACAACGGCCATGTCGCCGCGGTCGCGGCGCTGA
TCGCGGCAGGCGCCGACGTCAACGCGAAGTCGCCGCAGGGCTGGACCGCGCTCGCCAAGGCGGCCTACAACGGCGACACC
GAACGCGGCTACGTCGAAGTGCTCGAGGTCCTGCACGAGGCCGGTGCCTCGCTCGACGAGCGGATCTTCTTCGGCATCAC
GCCGCTCATGCTGGCCGCGGGCGGCGGCGACGCGGCGGTCGTCGAATGGCTGATCAACGCCGGCGCCGACGTGCTCGCGA
CCAACGAAGGCGGCCGCACCGCGCGCCTGATGGCCAACGACAAGTTCTACGTCGACGTGATCAATCTGCTGACCGAGGCC
GAGCGCCAACTCGGCGTGTCGGAGGACGGCTCGTGCTCGTCGACCAAGAGTGTGGTCAAGCCGCAGGTCGTCAACCTCAT
GAAGCCGACCACGCACTGA

Upstream 100 bases:

>100_bases
AGCCGGGCCGCGTTCACGCCGCGCGGCCGGCCCTTAATAGTTGATTAAATCGGTCAACAATTGTACGCTCGCAGCGAGAT
TTCGAAACAAAGGAGCCGTC

Downstream 100 bases:

>100_bases
GCGGGTAGAGGCGAGGTTTCCGCCGCAATGCCGCGCTCAGCGCCCGAGCCAGTCGGCCAGGCCGGGCCAGTCCTCCAGGT
CGCGCTCGGCGACGTGAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MLQELFVAASSGDVARIEALLAAGADHAAADEAGETALMHAAHNGHVAAVAALIAAGADVNAKSPQGWTALAKAAYNGDT
ERGYVEVLEVLHEAGASLDERIFFGITPLMLAAGGGDAAVVEWLINAGADVLATNEGGRTARLMANDKFYVDVINLLTEA
ERQLGVSEDGSCSSTKSVVKPQVVNLMKPTTH

Sequences:

>Translated_192_residues
MLQELFVAASSGDVARIEALLAAGADHAAADEAGETALMHAAHNGHVAAVAALIAAGADVNAKSPQGWTALAKAAYNGDT
ERGYVEVLEVLHEAGASLDERIFFGITPLMLAAGGGDAAVVEWLINAGADVLATNEGGRTARLMANDKFYVDVINLLTEA
ERQLGVSEDGSCSSTKSVVKPQVVNLMKPTTH
>Mature_192_residues
MLQELFVAASSGDVARIEALLAAGADHAAADEAGETALMHAAHNGHVAAVAALIAAGADVNAKSPQGWTALAKAAYNGDT
ERGYVEVLEVLHEAGASLDERIFFGITPLMLAAGGGDAAVVEWLINAGADVLATNEGGRTARLMANDKFYVDVINLLTEA
ERQLGVSEDGSCSSTKSVVKPQVVNLMKPTTH

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI268607595, Length=138, Percent_Identity=39.8550724637681, Blast_Score=79, Evalue=2e-15,
Organism=Homo sapiens, GI62988328, Length=138, Percent_Identity=39.8550724637681, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI55741641, Length=175, Percent_Identity=30.2857142857143, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI157739945, Length=125, Percent_Identity=39.2, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI38683807, Length=157, Percent_Identity=35.6687898089172, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI24233530, Length=136, Percent_Identity=39.7058823529412, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI38683816, Length=157, Percent_Identity=35.6687898089172, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI30425444, Length=154, Percent_Identity=35.7142857142857, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI37620163, Length=158, Percent_Identity=39.2405063291139, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI70995267, Length=167, Percent_Identity=33.5329341317365, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI46519147, Length=158, Percent_Identity=39.2405063291139, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI18252778, Length=133, Percent_Identity=32.3308270676692, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI225543463, Length=134, Percent_Identity=35.8208955223881, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI225543461, Length=134, Percent_Identity=35.8208955223881, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI46519151, Length=167, Percent_Identity=35.9281437125749, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI46519154, Length=167, Percent_Identity=35.9281437125749, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI42734375, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI56676397, Length=124, Percent_Identity=37.0967741935484, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI30348954, Length=167, Percent_Identity=31.7365269461078, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI92087060, Length=155, Percent_Identity=30.9677419354839, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809478, Length=170, Percent_Identity=28.8235294117647, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809474, Length=170, Percent_Identity=28.8235294117647, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809472, Length=170, Percent_Identity=28.8235294117647, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809470, Length=170, Percent_Identity=28.8235294117647, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809468, Length=170, Percent_Identity=28.8235294117647, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI68131557, Length=136, Percent_Identity=35.2941176470588, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI224809476, Length=170, Percent_Identity=28.8235294117647, Blast_Score=66, Evalue=1e-11,
Organism=Homo sapiens, GI16975496, Length=151, Percent_Identity=34.4370860927152, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI148596917, Length=115, Percent_Identity=36.5217391304348, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI255982572, Length=168, Percent_Identity=31.547619047619, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI22208951, Length=169, Percent_Identity=31.3609467455621, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI7705831, Length=169, Percent_Identity=31.3609467455621, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI188595682, Length=155, Percent_Identity=29.6774193548387, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI52426737, Length=155, Percent_Identity=29.6774193548387, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI52426735, Length=156, Percent_Identity=30.1282051282051, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI32967601, Length=155, Percent_Identity=31.6129032258064, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI304361760, Length=124, Percent_Identity=34.6774193548387, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI304361757, Length=124, Percent_Identity=34.6774193548387, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI10863929, Length=172, Percent_Identity=33.1395348837209, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI212646035, Length=173, Percent_Identity=33.5260115606936, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI212646033, Length=173, Percent_Identity=33.5260115606936, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI212646031, Length=173, Percent_Identity=33.5260115606936, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17541900, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17541898, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193206531, Length=175, Percent_Identity=30.8571428571429, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193206533, Length=175, Percent_Identity=30.8571428571429, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71981411, Length=156, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI221330480, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281363919, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221330478, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221330474, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45550479, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221330476, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28573593, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221330482, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI45551135, Length=156, Percent_Identity=35.2564102564103, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581260, Length=170, Percent_Identity=32.9411764705882, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581258, Length=170, Percent_Identity=32.9411764705882, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650843, Length=153, Percent_Identity=33.9869281045752, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28571867, Length=158, Percent_Identity=37.3417721518987, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI28571865, Length=158, Percent_Identity=37.3417721518987, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI45553307, Length=138, Percent_Identity=36.231884057971, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644921, Length=138, Percent_Identity=36.231884057971, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644919, Length=138, Percent_Identity=36.231884057971, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161078304, Length=122, Percent_Identity=35.2459016393443, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17998549, Length=136, Percent_Identity=33.0882352941176, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552223, Length=136, Percent_Identity=33.0882352941176, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI221472807, Length=136, Percent_Identity=33.0882352941176, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683 [H]

Pfam domain/function: PF00023 Ank [H]

EC number: NA

Molecular weight: Translated: 19780; Mature: 19780

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQELFVAASSGDVARIEALLAAGADHAAADEAGETALMHAAHNGHVAAVAALIAAGADV
CCHHHEEECCCCCHHHHHHHHHCCCCCHHHCCCCCHHEECCCCCCHHHHHHHHHHHCCCC
NAKSPQGWTALAKAAYNGDTERGYVEVLEVLHEAGASLDERIFFGITPLMLAAGGGDAAV
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHEECCCCCHHH
VEWLINAGADVLATNEGGRTARLMANDKFYVDVINLLTEAERQLGVSEDGSCSSTKSVVK
HHHHHHCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
PQVVNLMKPTTH
HHHHHHCCCCCC
>Mature Secondary Structure
MLQELFVAASSGDVARIEALLAAGADHAAADEAGETALMHAAHNGHVAAVAALIAAGADV
CCHHHEEECCCCCHHHHHHHHHCCCCCHHHCCCCCHHEECCCCCCHHHHHHHHHHHCCCC
NAKSPQGWTALAKAAYNGDTERGYVEVLEVLHEAGASLDERIFFGITPLMLAAGGGDAAV
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHEECCCCCHHH
VEWLINAGADVLATNEGGRTARLMANDKFYVDVINLLTEAERQLGVSEDGSCSSTKSVVK
HHHHHHCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
PQVVNLMKPTTH
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]