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The map label for this gene is sohB [H]

Identifier: 74318647

GI number: 74318647

Start: 2702008

End: 2703009

Strand: Direct

Name: sohB [H]

Synonym: Tbd_2629

Alternate gene names: 74318647

Gene position: 2702008-2703009 (Clockwise)

Preceding gene: 74318646

Following gene: 74318648

Centisome position: 92.86

GC content: 69.36

Gene sequence:

>1002_bases
TTGAACGACTTCGTCGCGCGATATTTCCTTTTTCTCGCCGAGGCCGCGACGCTCGTGCTCGCGGTGACCGGCGCGATCGC
CGCGCTGATCGCAGTAGCGCGGCGCAGAAGCGAAGACTGCGGCCGCCTCCGCGTCAGCGACGTCGGACGCCGGTTCGCGG
CGGCCGGCGACGAAATCCGCAGCGCACGACTCGACAAGCGCACCTACCGGCGCCCGCGCCGGACAGGCCGGCACCGCAGG
ACGCGGCCGGAAACGACGAAGGCGACGCCGTGCAGCTACCTCCTCGACTTCAAGGGCGACATCCGTGCGAGCGCGGTTGC
CGCACTGCGCGAGGAGGTCAGCGCCGTTCTTGAAGTCGCCCAGCCCGGCGACGCGGTACTCGTCCGGCTCGAAAGCGGCG
GCGGCCTCGTCAACCGTTACGGTCTCGGCGCCGCCCAGTTGCTGAGGATCCGCGACGCACAGCTGCCGCTTACCGTAATG
GTCGACAGCGTCGCCGCAAGCGGCGGTTATCTGATGGCCGCCGTCGCCGACACGATCGTCGCCTCGCCTTTTGCGCTCGT
CGGCTCGATTGGCGTCGTCGCGCAGACGCCCAATTTCCATCGCTGGCTGCGGGCGCGCGACATCGACTGGGAGCAGTTCA
CCGCGGGGCAATACAAACGGACCGTGACGCTGTTCGGCGAGAACACCGAAACGGGCCGCGCCAAGCTGCGCGAGGAACTC
GACGACATCCACGCGCTGTTCCGTGCGTTCGTGCAAGCGCGCCGCCCGCAGCTCGACGTCGACAAGGTCGCCACCGGCGA
GACCTGGCTCGGCAGCCGGGCGCTCGAACTCGGGCTCGTCGACGAAATCGCGACCAGCGACGAGCTCATTCGCGCGGCCT
GCCGCCGCGGCAAGGTGCTGCACCTGAGCTTCCAGCGCAAAGCGCGGCTGACCGAGCGCGTCGGGCGCGCGGCCCAGACC
ATGTGGGACGGAATCTGGCAGCCACCCCAGCCGCTACGCTGA

Upstream 100 bases:

>100_bases
TTCGACCAGCAAGTCGGACCACGACGCGCTACGCTAGGCGAGCGGAGATGCGAGGCCGACTTGCAGTCCTCCCGCGGCGC
GCCACGCCGTTTGCGCACGC

Downstream 100 bases:

>100_bases
GCGGCAGCAGCCTGCTGCTTGTCTGCATTTGCGGCAACGGTGAAGATGGGCGAAACGCCCAGAGACTCGCCATGAAACGC
ATTCCTGCACACGGCTCGAC

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MNDFVARYFLFLAEAATLVLAVTGAIAALIAVARRRSEDCGRLRVSDVGRRFAAAGDEIRSARLDKRTYRRPRRTGRHRR
TRPETTKATPCSYLLDFKGDIRASAVAALREEVSAVLEVAQPGDAVLVRLESGGGLVNRYGLGAAQLLRIRDAQLPLTVM
VDSVAASGGYLMAAVADTIVASPFALVGSIGVVAQTPNFHRWLRARDIDWEQFTAGQYKRTVTLFGENTETGRAKLREEL
DDIHALFRAFVQARRPQLDVDKVATGETWLGSRALELGLVDEIATSDELIRAACRRGKVLHLSFQRKARLTERVGRAAQT
MWDGIWQPPQPLR

Sequences:

>Translated_333_residues
MNDFVARYFLFLAEAATLVLAVTGAIAALIAVARRRSEDCGRLRVSDVGRRFAAAGDEIRSARLDKRTYRRPRRTGRHRR
TRPETTKATPCSYLLDFKGDIRASAVAALREEVSAVLEVAQPGDAVLVRLESGGGLVNRYGLGAAQLLRIRDAQLPLTVM
VDSVAASGGYLMAAVADTIVASPFALVGSIGVVAQTPNFHRWLRARDIDWEQFTAGQYKRTVTLFGENTETGRAKLREEL
DDIHALFRAFVQARRPQLDVDKVATGETWLGSRALELGLVDEIATSDELIRAACRRGKVLHLSFQRKARLTERVGRAAQT
MWDGIWQPPQPLR
>Mature_333_residues
MNDFVARYFLFLAEAATLVLAVTGAIAALIAVARRRSEDCGRLRVSDVGRRFAAAGDEIRSARLDKRTYRRPRRTGRHRR
TRPETTKATPCSYLLDFKGDIRASAVAALREEVSAVLEVAQPGDAVLVRLESGGGLVNRYGLGAAQLLRIRDAQLPLTVM
VDSVAASGGYLMAAVADTIVASPFALVGSIGVVAQTPNFHRWLRARDIDWEQFTAGQYKRTVTLFGENTETGRAKLREEL
DDIHALFRAFVQARRPQLDVDKVATGETWLGSRALELGLVDEIATSDELIRAACRRGKVLHLSFQRKARLTERVGRAAQT
MWDGIWQPPQPLR

Specific function: Multicopy suppressor of the htrA (degP) null phenotype. It is possibly a protease, not essential for bacterial viability [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=331, Percent_Identity=46.5256797583082, Blast_Score=283, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 36824; Mature: 36824

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFVARYFLFLAEAATLVLAVTGAIAALIAVARRRSEDCGRLRVSDVGRRFAAAGDEIR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCHHHH
SARLDKRTYRRPRRTGRHRRTRPETTKATPCSYLLDFKGDIRASAVAALREEVSAVLEVA
HHHHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
QPGDAVLVRLESGGGLVNRYGLGAAQLLRIRDAQLPLTVMVDSVAASGGYLMAAVADTIV
CCCCEEEEEECCCCCEEHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
ASPFALVGSIGVVAQTPNFHRWLRARDIDWEQFTAGQYKRTVTLFGENTETGRAKLREEL
HCHHHHHHCCCCEECCCCHHHHHHHCCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHH
DDIHALFRAFVQARRPQLDVDKVATGETWLGSRALELGLVDEIATSDELIRAACRRGKVL
HHHHHHHHHHHHHCCCCCCHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
HLSFQRKARLTERVGRAAQTMWDGIWQPPQPLR
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNDFVARYFLFLAEAATLVLAVTGAIAALIAVARRRSEDCGRLRVSDVGRRFAAAGDEIR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHCCHHHH
SARLDKRTYRRPRRTGRHRRTRPETTKATPCSYLLDFKGDIRASAVAALREEVSAVLEVA
HHHHHHHHHHCHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
QPGDAVLVRLESGGGLVNRYGLGAAQLLRIRDAQLPLTVMVDSVAASGGYLMAAVADTIV
CCCCEEEEEECCCCCEEHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
ASPFALVGSIGVVAQTPNFHRWLRARDIDWEQFTAGQYKRTVTLFGENTETGRAKLREEL
HCHHHHHHCCCCEECCCCHHHHHHHCCCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHH
DDIHALFRAFVQARRPQLDVDKVATGETWLGSRALELGLVDEIATSDELIRAACRRGKVL
HHHHHHHHHHHHHCCCCCCHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
HLSFQRKARLTERVGRAAQTMWDGIWQPPQPLR
EEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885549; 9097039; 9278503; 3029379 [H]