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The map label for this gene is cbbR1 [H]

Identifier: 74318643

GI number: 74318643

Start: 2697966

End: 2698907

Strand: Direct

Name: cbbR1 [H]

Synonym: Tbd_2625

Alternate gene names: 74318643

Gene position: 2697966-2698907 (Clockwise)

Preceding gene: 74318638

Following gene: 74318646

Centisome position: 92.72

GC content: 65.71

Gene sequence:

>942_bases
ATGCATAGCCATACCACATTCCGCCAGTTGGAAATTTTCGAGGCCATCGCGCGCCTCGGCAGTTTCACCCGTGCCTCCGA
GGAGCTCTACCTCACGCAGCCCACGGTCTCGATGCAGATGAAGAAGCTCAGCGAGAACGTCGGCGCGCCGCTGATCGAGC
ACATAGGCAAGCGCATCCACCTCACCGCCGACGGCCAGCAGCTCGCGCAGGCGACGCGCGAGATCTTCGCCATCCTCGAC
CGCTTCACGATGTCGGTCGCCGAGCGTCGCGGCCTCAAGCAGGGCAAGCTGAGCCTCATGGCGATCACGACCGCTTCGTA
CTTCGCGCCGCGCCTGCTCGGTGAATTCGCCAAGCTCTACCCCGGCATCGACGTCTCGCTGCGCGTGACCAACAAGGAGC
AGGTGCTCGCGAGCATCGCCGACAACCTCGACGACCTGTATTTTCTGGGCCAGCCGCCCGAAGACATCGACGTCATCGCG
ACGCCGATCATGGACAACCCGATCGTCGTGCTCGCCGCCCCCGACCATCCGCTCGCGCACACGCGCAAGATCCCGCTCGA
GCAGTTGGCCAAGGAATCCTGGCTCATGCGCGAGAAAGGCTCGGGCACGCGCAACGCGATCGAGCGGCGCTTTGCCGAAA
GCGGCATCGCCGTCCATCCACGCCTCGAACTCGGCAGCAACGAGGCGATCAAGCAGGCGATTCTCGCCGGGCTCGGCATC
TCGGCGCTGTCGCGCCATGCGCTCGCGCTCAATCAGCCCGACCAGTTCGCGGTGCTCGACGTCGACGGCTTTCCGATCCT
GCGCCACTGGTACGCGGTGTACCCGGCCGGGCGGCAGCTTTCGGTCGCCGCGCGCGCATTTCTCGACTATCTGCTCGGCG
ACGGGAAAGACGAGAAAAGCCTCGGCGACAAGAGGCGCTCAGCGCAGCGCGGGCGCGCGTAG

Upstream 100 bases:

>100_bases
CCGAATGATGCAGGAGAGGAATCATCAATAACAGTCGATTTTTTCTATTTAATCGATAGACTATTATTTATAGTTGACAT
CAAACAAACATTCTAATCCC

Downstream 100 bases:

>100_bases
CCCGCTCGACCCGGGCGTGGTCGCCGCCCGCTGCTAGTGCACGGGCACGGCCGCCGGCGCACGCCCGGCACGGCGCGCAC
GCTGCGGGGCCGGATCCGCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MHSHTTFRQLEIFEAIARLGSFTRASEELYLTQPTVSMQMKKLSENVGAPLIEHIGKRIHLTADGQQLAQATREIFAILD
RFTMSVAERRGLKQGKLSLMAITTASYFAPRLLGEFAKLYPGIDVSLRVTNKEQVLASIADNLDDLYFLGQPPEDIDVIA
TPIMDNPIVVLAAPDHPLAHTRKIPLEQLAKESWLMREKGSGTRNAIERRFAESGIAVHPRLELGSNEAIKQAILAGLGI
SALSRHALALNQPDQFAVLDVDGFPILRHWYAVYPAGRQLSVAARAFLDYLLGDGKDEKSLGDKRRSAQRGRA

Sequences:

>Translated_313_residues
MHSHTTFRQLEIFEAIARLGSFTRASEELYLTQPTVSMQMKKLSENVGAPLIEHIGKRIHLTADGQQLAQATREIFAILD
RFTMSVAERRGLKQGKLSLMAITTASYFAPRLLGEFAKLYPGIDVSLRVTNKEQVLASIADNLDDLYFLGQPPEDIDVIA
TPIMDNPIVVLAAPDHPLAHTRKIPLEQLAKESWLMREKGSGTRNAIERRFAESGIAVHPRLELGSNEAIKQAILAGLGI
SALSRHALALNQPDQFAVLDVDGFPILRHWYAVYPAGRQLSVAARAFLDYLLGDGKDEKSLGDKRRSAQRGRA
>Mature_313_residues
MHSHTTFRQLEIFEAIARLGSFTRASEELYLTQPTVSMQMKKLSENVGAPLIEHIGKRIHLTADGQQLAQATREIFAILD
RFTMSVAERRGLKQGKLSLMAITTASYFAPRLLGEFAKLYPGIDVSLRVTNKEQVLASIADNLDDLYFLGQPPEDIDVIA
TPIMDNPIVVLAAPDHPLAHTRKIPLEQLAKESWLMREKGSGTRNAIERRFAESGIAVHPRLELGSNEAIKQAILAGLGI
SALSRHALALNQPDQFAVLDVDGFPILRHWYAVYPAGRQLSVAARAFLDYLLGDGKDEKSLGDKRRSAQRGRA

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=31.8493150684932, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI145693105, Length=235, Percent_Identity=27.2340425531915, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI157672245, Length=221, Percent_Identity=27.1493212669683, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790399, Length=239, Percent_Identity=25.9414225941423, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789204, Length=241, Percent_Identity=26.9709543568465, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787879, Length=298, Percent_Identity=26.1744966442953, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789173, Length=142, Percent_Identity=34.5070422535211, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787530, Length=264, Percent_Identity=23.4848484848485, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082132, Length=244, Percent_Identity=25.4098360655738, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=25.5172413793103, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788887, Length=189, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787806, Length=263, Percent_Identity=22.4334600760456, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=253, Percent_Identity=22.9249011857708, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693193, Length=304, Percent_Identity=26.3157894736842, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34657; Mature: 34657

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSHTTFRQLEIFEAIARLGSFTRASEELYLTQPTVSMQMKKLSENVGAPLIEHIGKRIH
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHCCCEEE
LTADGQQLAQATREIFAILDRFTMSVAERRGLKQGKLSLMAITTASYFAPRLLGEFAKLY
EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC
PGIDVSLRVTNKEQVLASIADNLDDLYFLGQPPEDIDVIATPIMDNPIVVLAAPDHPLAH
CCCCEEEEECCHHHHHHHHHCCCHHEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCHH
TRKIPLEQLAKESWLMREKGSGTRNAIERRFAESGIAVHPRLELGSNEAIKQAILAGLGI
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCH
SALSRHALALNQPDQFAVLDVDGFPILRHWYAVYPAGRQLSVAARAFLDYLLGDGKDEKS
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
LGDKRRSAQRGRA
HHHHHHHHHCCCC
>Mature Secondary Structure
MHSHTTFRQLEIFEAIARLGSFTRASEELYLTQPTVSMQMKKLSENVGAPLIEHIGKRIH
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHCCCEEE
LTADGQQLAQATREIFAILDRFTMSVAERRGLKQGKLSLMAITTASYFAPRLLGEFAKLY
EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC
PGIDVSLRVTNKEQVLASIADNLDDLYFLGQPPEDIDVIATPIMDNPIVVLAAPDHPLAH
CCCCEEEEECCHHHHHHHHHCCCHHEEECCCCCCCCCEEEECCCCCCEEEEECCCCCCHH
TRKIPLEQLAKESWLMREKGSGTRNAIERRFAESGIAVHPRLELGSNEAIKQAILAGLGI
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHCCH
SALSRHALALNQPDQFAVLDVDGFPILRHWYAVYPAGRQLSVAARAFLDYLLGDGKDEKS
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
LGDKRRSAQRGRA
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA