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The map label for this gene is yqgF [C]

Identifier: 74318598

GI number: 74318598

Start: 2656021

End: 2656458

Strand: Direct

Name: yqgF [C]

Synonym: Tbd_2580

Alternate gene names: 74318598

Gene position: 2656021-2656458 (Clockwise)

Preceding gene: 74318597

Following gene: 74318599

Centisome position: 91.28

GC content: 65.07

Gene sequence:

>438_bases
TTGAGCGATGCACAGACCCACGGCACGGTGCTGGCCTTCGACCTCGGTTTGAAGCGCACCGGCGTCGCCTCGGGCGAACT
CGCGATCGGGATCGCGCACCCGCTGACCGTCATTCAGGCGGAGTCGACCGACGCGCGCATGGCGGCGATCGAGAAGCTCG
CCGCCGAATGGCAGCCGGCCCTCTTCGTGCTGGGCCTGCCGACGCGCGCCGACGGCAGCGAAAACGAAATGACGCGGGTC
GCCCGCAACTTCGCGCGCAGATTAGAATCTCGCTTCGAGCGACCGGTTTTTCTGATCGACGAGCGTCTCACGAGTGCGAC
CGCCGAATCGGAACTCCACGCCCGGGGCATCCACGGCAAGAAAAACAAGGCGCTGACCGACGCGGTCGCCGCACAACTCA
TCCTGCAGGGTTTTTTTGATGCACGCCTCACTGCCTGA

Upstream 100 bases:

>100_bases
CGCAGGTGATTTTCGACCTGGCCCCCGAAGAACGCCTGCCCGCGGCGATGAAGCTCCTCGGCATCGACTTCGCGAGCCTC
TCGGACGAAGCCGGACACGC

Downstream 100 bases:

>100_bases
CGCCAACACGCTGATCGCGCGGCTCGCCGAAAGCATCGCCCCGACGTTCGCGCCCGAGACCGTGATCGTCGGCATCCACA
GCGGCGGCGTCTGGGTCGCC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MSDAQTHGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPALFVLGLPTRADGSENEMTRV
ARNFARRLESRFERPVFLIDERLTSATAESELHARGIHGKKNKALTDAVAAQLILQGFFDARLTA

Sequences:

>Translated_145_residues
MSDAQTHGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPALFVLGLPTRADGSENEMTRV
ARNFARRLESRFERPVFLIDERLTSATAESELHARGIHGKKNKALTDAVAAQLILQGFFDARLTA
>Mature_144_residues
SDAQTHGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPALFVLGLPTRADGSENEMTRVA
RNFARRLESRFERPVFLIDERLTSATAESELHARGIHGKKNKALTDAVAAQLILQGFFDARLTA

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=42.1052631578947, Blast_Score=104, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_THIDA (Q3SFS3)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_316338.1
- ProteinModelPortal:   Q3SFS3
- SMR:   Q3SFS3
- STRING:   Q3SFS3
- GeneID:   3672556
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2580
- NMPDR:   fig|292415.3.peg.2653
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ACVILEQ
- PhylomeDB:   Q3SFS3
- ProtClustDB:   PRK00109
- BioCyc:   TDEN292415:TBD_2580-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15697; Mature: 15566

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAQTHGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPA
CCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCE
LFVLGLPTRADGSENEMTRVARNFARRLESRFERPVFLIDERLTSATAESELHARGIHGK
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCC
KNKALTDAVAAQLILQGFFDARLTA
CCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDAQTHGTVLAFDLGLKRTGVASGELAIGIAHPLTVIQAESTDARMAAIEKLAAEWQPA
CCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCE
LFVLGLPTRADGSENEMTRVARNFARRLESRFERPVFLIDERLTSATAESELHARGIHGK
EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCC
KNKALTDAVAAQLILQGFFDARLTA
CCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA