| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318594
Identifier: 74318594
GI number: 74318594
Start: 2651038
End: 2651922
Strand: Direct
Name: 74318594
Synonym: Tbd_2576
Alternate gene names: NA
Gene position: 2651038-2651922 (Clockwise)
Preceding gene: 74318593
Following gene: 74318595
Centisome position: 91.11
GC content: 64.63
Gene sequence:
>885_bases ATGGCGTCCATTCAACCCGTCTCTCTTGCCGAACCGTCCAAACAGGGAACGCGCATGGCGCTGGCCCTGCTCGCGTCGGC CGCAGTGCACGGCATGGCGCTTTCGACGCAATTCGTGCAGATCAATCCGAAGCTGTTCGAGGACCCGAACCTTCCGATGG AAGTCGTGCTGGTCAACGCGCGCAGCACCGATGCCCCGCTCAAGCCTGACGCGCTGGCACAGGTGAATCTCGCGGGGGGC GGCAATACGGACGAAGATCGCCGCCTGAAGAGTCCCCTGCCCGCCAGCCCAAAAACACAGCGCGGCGGCGAAGAGGCGGC GCTGCAGGCCCGGGTCAGAGAACTCGAGCAGCAGGCAAGAAATCTACTGACGCAACTGCAGCCCGACGCCGCGCCGCAAG ATGCGCAGACCCAGCCTGCGCCACCGGCGCCGACGGTCGATGCGAGCCAGCTCAACCTGCAGGCGCGCGAGATGGCGCAG CTGCAGGCGCGCATTTCGCAGCAATGGGATGAATACCAGAAGCGCCCGAAGCGCGCCTTCGTCGGCGCGAACGTCAAGGA ATACGCGTTCGCGCGCTACGTCGAGGACTGGGTCGCGAAGGTCGAGCGCGTCGGCAACCTGAACTATCCCGAAGCGGCTC GCCGCCAAGGGATCTACGGCAGCCTCAAGCTGACGGTATCGATCTATGCCAACGGCAAGATCGAAAAAATCGAGGTCGAC CGCTCGTCGGGCTCGAAGGTCCTCGATGCAGCGGCAGTCAGGATCGTCGAACTCGCCGCGCCCTATGCGCCGTTCCCGGC GGACATGCAGAAGAAAGCCGACATCCTGTCGATCACCCGCACCTGGACCTTCACCCGCTCGGACCAGCTCGTCGGCACCG AGTAA
Upstream 100 bases:
>100_bases TCGACCTGCTCGACATCAGCTTCCACGCCGAATATCTCGAGACCGTGCCTGACAGCACGGCCGCCGTTCCGTAGAATCGA CGAACCCACTTTCGCGCACC
Downstream 100 bases:
>100_bases GCGCCCTCAAGCTTTCCCCGCCTGCCGGCCGCGGATTCACGCGCTTTATCACGTGATAAAATCTTTGATTGTTCGAATAT TTTTCTCTACTTCTGGAGTT
Product: TonB-like protein
Products: NA
Alternate protein names: NB Protein; NB-Like Protein; NB Family C-Terminal Domain Protein; NB-Like; NB C-Terminal; NB Domain-Containing Protein; Periplasmic Protein nB Links Inner And Outer Membranes; NB-Related Transmembrane Protein; Nb Family Protein; NB Domain Protein; NB-Like Domain-Containing Protein; Periplasmic Protein/ Biopolymer Transport; NB-Dependent Receptor; NB Family C-Terminal Domain-Containing; Nb Protein
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNARSTDAPLKPDALAQVNLAGG GNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQARNLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQ LQARISQQWDEYQKRPKRAFVGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE
Sequences:
>Translated_294_residues MASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNARSTDAPLKPDALAQVNLAGG GNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQARNLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQ LQARISQQWDEYQKRPKRAFVGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE >Mature_293_residues ASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNARSTDAPLKPDALAQVNLAGGG NTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQARNLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQL QARISQQWDEYQKRPKRAFVGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVDR SSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE
Specific function: Unknown
COG id: COG0810
COG function: function code M; Periplasmic protein TonB, links inner and outer membranes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32126; Mature: 31995
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEECCCCCCEEEEEEEC RSTDAPLKPDALAQVNLAGGGNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQAR CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH NLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQLQARISQQWDEYQKRPKRAF HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEE VGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEEEEEECCEEEEEEEC RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCC >Mature Secondary Structure ASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEECCCCCCEEEEEEEC RSTDAPLKPDALAQVNLAGGGNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQAR CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH NLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQLQARISQQWDEYQKRPKRAF HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEE VGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEEEEEECCEEEEEEEC RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA