Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74318594

Identifier: 74318594

GI number: 74318594

Start: 2651038

End: 2651922

Strand: Direct

Name: 74318594

Synonym: Tbd_2576

Alternate gene names: NA

Gene position: 2651038-2651922 (Clockwise)

Preceding gene: 74318593

Following gene: 74318595

Centisome position: 91.11

GC content: 64.63

Gene sequence:

>885_bases
ATGGCGTCCATTCAACCCGTCTCTCTTGCCGAACCGTCCAAACAGGGAACGCGCATGGCGCTGGCCCTGCTCGCGTCGGC
CGCAGTGCACGGCATGGCGCTTTCGACGCAATTCGTGCAGATCAATCCGAAGCTGTTCGAGGACCCGAACCTTCCGATGG
AAGTCGTGCTGGTCAACGCGCGCAGCACCGATGCCCCGCTCAAGCCTGACGCGCTGGCACAGGTGAATCTCGCGGGGGGC
GGCAATACGGACGAAGATCGCCGCCTGAAGAGTCCCCTGCCCGCCAGCCCAAAAACACAGCGCGGCGGCGAAGAGGCGGC
GCTGCAGGCCCGGGTCAGAGAACTCGAGCAGCAGGCAAGAAATCTACTGACGCAACTGCAGCCCGACGCCGCGCCGCAAG
ATGCGCAGACCCAGCCTGCGCCACCGGCGCCGACGGTCGATGCGAGCCAGCTCAACCTGCAGGCGCGCGAGATGGCGCAG
CTGCAGGCGCGCATTTCGCAGCAATGGGATGAATACCAGAAGCGCCCGAAGCGCGCCTTCGTCGGCGCGAACGTCAAGGA
ATACGCGTTCGCGCGCTACGTCGAGGACTGGGTCGCGAAGGTCGAGCGCGTCGGCAACCTGAACTATCCCGAAGCGGCTC
GCCGCCAAGGGATCTACGGCAGCCTCAAGCTGACGGTATCGATCTATGCCAACGGCAAGATCGAAAAAATCGAGGTCGAC
CGCTCGTCGGGCTCGAAGGTCCTCGATGCAGCGGCAGTCAGGATCGTCGAACTCGCCGCGCCCTATGCGCCGTTCCCGGC
GGACATGCAGAAGAAAGCCGACATCCTGTCGATCACCCGCACCTGGACCTTCACCCGCTCGGACCAGCTCGTCGGCACCG
AGTAA

Upstream 100 bases:

>100_bases
TCGACCTGCTCGACATCAGCTTCCACGCCGAATATCTCGAGACCGTGCCTGACAGCACGGCCGCCGTTCCGTAGAATCGA
CGAACCCACTTTCGCGCACC

Downstream 100 bases:

>100_bases
GCGCCCTCAAGCTTTCCCCGCCTGCCGGCCGCGGATTCACGCGCTTTATCACGTGATAAAATCTTTGATTGTTCGAATAT
TTTTCTCTACTTCTGGAGTT

Product: TonB-like protein

Products: NA

Alternate protein names: NB Protein; NB-Like Protein; NB Family C-Terminal Domain Protein; NB-Like; NB C-Terminal; NB Domain-Containing Protein; Periplasmic Protein nB Links Inner And Outer Membranes; NB-Related Transmembrane Protein; Nb Family Protein; NB Domain Protein; NB-Like Domain-Containing Protein; Periplasmic Protein/ Biopolymer Transport; NB-Dependent Receptor; NB Family C-Terminal Domain-Containing; Nb Protein

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNARSTDAPLKPDALAQVNLAGG
GNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQARNLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQ
LQARISQQWDEYQKRPKRAFVGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD
RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE

Sequences:

>Translated_294_residues
MASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNARSTDAPLKPDALAQVNLAGG
GNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQARNLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQ
LQARISQQWDEYQKRPKRAFVGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD
RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE
>Mature_293_residues
ASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNARSTDAPLKPDALAQVNLAGGG
NTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQARNLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQL
QARISQQWDEYQKRPKRAFVGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVDR
SSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE

Specific function: Unknown

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32126; Mature: 31995

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEECCCCCCEEEEEEEC
RSTDAPLKPDALAQVNLAGGGNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQAR
CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
NLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQLQARISQQWDEYQKRPKRAF
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEE
VGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEEEEEECCEEEEEEEC
RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
ASIQPVSLAEPSKQGTRMALALLASAAVHGMALSTQFVQINPKLFEDPNLPMEVVLVNA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEECCCCCCEEEEEEEC
RSTDAPLKPDALAQVNLAGGGNTDEDRRLKSPLPASPKTQRGGEEAALQARVRELEQQAR
CCCCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
NLLTQLQPDAAPQDAQTQPAPPAPTVDASQLNLQAREMAQLQARISQQWDEYQKRPKRAF
HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEE
VGANVKEYAFARYVEDWVAKVERVGNLNYPEAARRQGIYGSLKLTVSIYANGKIEKIEVD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEEEEEEECCEEEEEEEC
RSSGSKVLDAAAVRIVELAAPYAPFPADMQKKADILSITRTWTFTRSDQLVGTE
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA