| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is pucG [H]
Identifier: 74318527
GI number: 74318527
Start: 2582510
End: 2583643
Strand: Direct
Name: pucG [H]
Synonym: Tbd_2509
Alternate gene names: 74318527
Gene position: 2582510-2583643 (Clockwise)
Preceding gene: 74318526
Following gene: 74318530
Centisome position: 88.75
GC content: 65.78
Gene sequence:
>1134_bases ATGACGGCTTCCTTCCTCCCTCCCAAGCGCATCCTCATGGGTCCCGGCCCGTCCGACGTACCGCAGCGCGTGCTCGACGC GATGGCGCGTCCGACGATCGGCCACCTCGACCCGGCCTTCGTCGACCTGATGGAGCAGATCAAGGCCATGTTGCGCATGG CGTTCCGGACCGAGAACGCGCTGACCTTCCCGGTTTCGGCCCCCGGTTCGGCAGGGATGGAGATGTGCTTCGTCAACCTC GTCGAGCCCGGCGACAAGGTCATCGTCTGCCGCAACGGCGTGTTCGGCGGACGCATGCTCGAGAACGTCAAGCGCACGGG CGGCGTGCCGGTGGTCGTCGATGACGCCTGGGGCGCAGCGGTCGACCCGCAAAAGGTGCGCGATGCCTTCAAGTCGAACC CGGACGCCAAGGTGCTCGCCTTCGTGCACGCCGAGACGTCGACCGGCGCGCAGTCCGACGCTGCGGCCCTGGCGAAGATC GCGCAGGAAGCCGGCGCGCTCACGATCTTGGACTGCGTCACGAGCCTGGGCGGAACGCCCGTGCTGCTCGACCAGTGGCG CATCGACGCCGCTTACTCCGGCAGCCAGAAGTGCCTGTCGTGCACGCCGGGCCTCTCGCCGGTCTCGTTCTCGGAACGTG CCATCGAAAAGATCAAAGCACGCAAGACGCCCGTGCAGAGCTGGTTCCTCGACCTCAATCTCGTGCTCGGCTACTGGCAG TCGGCGGGCAAACGCACCTATCACCACACCGCGCCGATCAATCCGATGTATGGCCTGCACGAGTCGCTGGTGATGCTCGA GGAGGAAGGCCTGGAGAATTCCTGGGCGCGCCATCGTGCGATGCACGAGAAGCTGAAGGCTGGCCTCGAAGGGCTCGGCC TGCGTTATGTCGTCGAGGAAAGCGCCCGCCTGCCGCAGCTCAACTCGATCTACGTGCCTGAAGGCGTCGACGAAGCCGCG ATCCGCAGCCGGCTCCTGAGCGAGTTCAATCTCGAAATCGGTGCCGGACTCGGCGACATGGCCGGCAAGATCTGGCGCAT CGGCCTGATGGGCTATTCGGCCAAGCAGGCGAACATCGACCTTTGCCTGCAGGCGCTGAGTGCCTGCCTCGAGAAAAGCG CAGCCGGGGCTTGA
Upstream 100 bases:
>100_bases CAGAAACGCGCCGGAGCTCGGACGGGTTTTGGTCGCACCGCTTTAGCCGTAAAATCAACCCTTTGTTTTATTTGACGTTT TCCACATCGAGACCAAGGTT
Downstream 100 bases:
>100_bases GGTCGGCCCGGCGGCGCGTCGCTATTCAAGCGGCGAATGAGGACGGCCCCTGCGCGGGGCCGTAGTCATATCAGCCCCAT CAGCAGCAGCACGATCAGAA
Product: alanine-glyoxylate aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MTASFLPPKRILMGPGPSDVPQRVLDAMARPTIGHLDPAFVDLMEQIKAMLRMAFRTENALTFPVSAPGSAGMEMCFVNL VEPGDKVIVCRNGVFGGRMLENVKRTGGVPVVVDDAWGAAVDPQKVRDAFKSNPDAKVLAFVHAETSTGAQSDAAALAKI AQEAGALTILDCVTSLGGTPVLLDQWRIDAAYSGSQKCLSCTPGLSPVSFSERAIEKIKARKTPVQSWFLDLNLVLGYWQ SAGKRTYHHTAPINPMYGLHESLVMLEEEGLENSWARHRAMHEKLKAGLEGLGLRYVVEESARLPQLNSIYVPEGVDEAA IRSRLLSEFNLEIGAGLGDMAGKIWRIGLMGYSAKQANIDLCLQALSACLEKSAAGA
Sequences:
>Translated_377_residues MTASFLPPKRILMGPGPSDVPQRVLDAMARPTIGHLDPAFVDLMEQIKAMLRMAFRTENALTFPVSAPGSAGMEMCFVNL VEPGDKVIVCRNGVFGGRMLENVKRTGGVPVVVDDAWGAAVDPQKVRDAFKSNPDAKVLAFVHAETSTGAQSDAAALAKI AQEAGALTILDCVTSLGGTPVLLDQWRIDAAYSGSQKCLSCTPGLSPVSFSERAIEKIKARKTPVQSWFLDLNLVLGYWQ SAGKRTYHHTAPINPMYGLHESLVMLEEEGLENSWARHRAMHEKLKAGLEGLGLRYVVEESARLPQLNSIYVPEGVDEAA IRSRLLSEFNLEIGAGLGDMAGKIWRIGLMGYSAKQANIDLCLQALSACLEKSAAGA >Mature_376_residues TASFLPPKRILMGPGPSDVPQRVLDAMARPTIGHLDPAFVDLMEQIKAMLRMAFRTENALTFPVSAPGSAGMEMCFVNLV EPGDKVIVCRNGVFGGRMLENVKRTGGVPVVVDDAWGAAVDPQKVRDAFKSNPDAKVLAFVHAETSTGAQSDAAALAKIA QEAGALTILDCVTSLGGTPVLLDQWRIDAAYSGSQKCLSCTPGLSPVSFSERAIEKIKARKTPVQSWFLDLNLVLGYWQS AGKRTYHHTAPINPMYGLHESLVMLEEEGLENSWARHRAMHEKLKAGLEGLGLRYVVEESARLPQLNSIYVPEGVDEAAI RSRLLSEFNLEIGAGLGDMAGKIWRIGLMGYSAKQANIDLCLQALSACLEKSAAGA
Specific function: Could encode ureidoglycolase or L-alanine:glyoxylate aminotransferase, or perhaps both activities [H]
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=366, Percent_Identity=36.8852459016393, Blast_Score=250, Evalue=1e-66, Organism=Caenorhabditis elegans, GI17536281, Length=373, Percent_Identity=39.142091152815, Blast_Score=256, Evalue=1e-68, Organism=Saccharomyces cerevisiae, GI6321079, Length=385, Percent_Identity=27.2727272727273, Blast_Score=107, Evalue=3e-24, Organism=Drosophila melanogaster, GI17530823, Length=372, Percent_Identity=36.8279569892473, Blast_Score=259, Evalue=2e-69,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: 2.6.1.-
Molecular weight: Translated: 40619; Mature: 40488
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASFLPPKRILMGPGPSDVPQRVLDAMARPTIGHLDPAFVDLMEQIKAMLRMAFRTENA CCCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC LTFPVSAPGSAGMEMCFVNLVEPGDKVIVCRNGVFGGRMLENVKRTGGVPVVVDDAWGAA EEEECCCCCCCCHHHHEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC VDPQKVRDAFKSNPDAKVLAFVHAETSTGAQSDAAALAKIAQEAGALTILDCVTSLGGTP CCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCE VLLDQWRIDAAYSGSQKCLSCTPGLSPVSFSERAIEKIKARKTPVQSWFLDLNLVLGYWQ EEEECEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SAGKRTYHHTAPINPMYGLHESLVMLEEEGLENSWARHRAMHEKLKAGLEGLGLRYVVEE HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHH SARLPQLNSIYVPEGVDEAAIRSRLLSEFNLEIGAGLGDMAGKIWRIGLMGYSAKQANID CCCCCCCCCEECCCCCCHHHHHHHHHHHHCHHHCCCCHHHHHHHEEEEEECCCCCCCCHH LCLQALSACLEKSAAGA HHHHHHHHHHHHHCCCC >Mature Secondary Structure TASFLPPKRILMGPGPSDVPQRVLDAMARPTIGHLDPAFVDLMEQIKAMLRMAFRTENA CCCCCCCHHEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC LTFPVSAPGSAGMEMCFVNLVEPGDKVIVCRNGVFGGRMLENVKRTGGVPVVVDDAWGAA EEEECCCCCCCCHHHHEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC VDPQKVRDAFKSNPDAKVLAFVHAETSTGAQSDAAALAKIAQEAGALTILDCVTSLGGTP CCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCE VLLDQWRIDAAYSGSQKCLSCTPGLSPVSFSERAIEKIKARKTPVQSWFLDLNLVLGYWQ EEEECEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SAGKRTYHHTAPINPMYGLHESLVMLEEEGLENSWARHRAMHEKLKAGLEGLGLRYVVEE HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHH SARLPQLNSIYVPEGVDEAAIRSRLLSEFNLEIGAGLGDMAGKIWRIGLMGYSAKQANID CCCCCCCCCEECCCCCCHHHHHHHHHHHHCHHHCCCCHHHHHHHEEEEEECCCCCCCCHH LCLQALSACLEKSAAGA HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]