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The map label for this gene is tapC [H]

Identifier: 74318387

GI number: 74318387

Start: 2442789

End: 2444012

Strand: Reverse

Name: tapC [H]

Synonym: Tbd_2369

Alternate gene names: 74318387

Gene position: 2444012-2442789 (Counterclockwise)

Preceding gene: 74318388

Following gene: 74318386

Centisome position: 83.99

GC content: 61.76

Gene sequence:

>1224_bases
ATGGCGACAGCGGCAAAGGCAGTCAAGGACGCGACCTTCCTGTGGGAAGGCATGGACAAGCGCGGCAAGAAGGTCAAGGG
TCAGATCCAGGCCGCCGGCGAAACGCTTGTCAACGCGCAGCTACGCAAGCAGGGGATCCGGGTCACGAAGCTCAAGAAGC
AGAGCAATCTTTTCGGCGGCGGCAAGCGCATCACCGAAAAGGATGTCGCGCTCTTCACGCGGCAGCTCGCGACCATGATG
AAGGCCGGCGTGCCCTTGCTGCAGTCGTTCGAAATCGTGGCCCGCGGGCACTCCAACCCGTCAATGCAGCGGCTGCTCAT
GGAGATCAAGGCCGACATCGAGAAGGGCAGCAGCCTCACGCAGTCGTTTGCACGGCACCCGCTCTATTTCGACGCACTCT
TCTGCAACCTCGTCGGGGCCGGCGAGGCGGCCGGTATCCTCGAGGCGGTGCTCGACCGGCTCGCGGTCTACAAGGAAAAG
ATCCTCGCGATCAAGGGCAAGATCAAGTCGGCGCTGTTCTACCCGGTGTCGATCATCGTGGTCGCCTTCGTCATCACGGC
GATCATCATGATTTTCGTCATCCCCGCCTTCAAGGAGCTATTCAGCAGCTTCGGGACGGACCTGCCGGGACCGACCCTGG
TCGTGATGGCGATTTCGGACTTTTTCGTCACGTGGTGGTGGGCGATTTTCGGCGGAATAGGCGGCGGCATCTACGCGTTT
CTGCAGGCGTGGAAGCGCTCGCGCAAGATCCAGATAGCCATGGACCGATTCTTGCTAAAGTTGCCCATTTTCGGCGCGGT
CATTGAAAAAGCGACGATCGCGCGCTGGACGCGCACGCTATCGACCATGTTCGCGGCAGGCGTACCGCTGGTCGAGGCAC
TCGAATCGGTTGCCGGCGCGTCGGGCAATCAGGTCTTCGTCGAGGCGACGCAGAAGATCCGCGGTGAGGTTGCGACCGGG
ACGGCCCTGACCGTCGCGATGCAGAACTCGGGGCGCTTTCCGAATATGGTGCTGCAGATGGCGGCGATCGGCGAGGAGTC
GGGCTCGCTCGACGCGATGCTCGGCAAGGTCGCCGATTTTTACGAGTCTGAAGTCGATGACGCCGTCGAGGCGCTGTCGA
GCCTGATGGAGCCCCTCATCATGGTCGTGTTGGGCACGCTGATCGGTGGGATGGTCATCGCGATGTACCTGCCGATCTTC
AAGATGGGCGCGGTCGTCGGATGA

Upstream 100 bases:

>100_bases
CGTGCTCGATTTGCGCCAGGCGGGTCTGTTGAAGGTAAAAGCCGGGCTCACCTCGCTGGAAGAGGTCGAGGCCGTTACCA
ACATTTAAGGAAATTCTTCG

Downstream 100 bases:

>100_bases
CGCTATTCGTCGCCGAACCGGCCCTCTTCACAGGGCTGGTTTTCCTGCTCGGCCTGCTCGTCGGCAGCTTTCTCAACGTC
GTCGTCCACCGCCTGCCGAA

Product: type IV pilus assembly protein PilC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MATAAKAVKDATFLWEGMDKRGKKVKGQIQAAGETLVNAQLRKQGIRVTKLKKQSNLFGGGKRITEKDVALFTRQLATMM
KAGVPLLQSFEIVARGHSNPSMQRLLMEIKADIEKGSSLTQSFARHPLYFDALFCNLVGAGEAAGILEAVLDRLAVYKEK
ILAIKGKIKSALFYPVSIIVVAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWWAIFGGIGGGIYAF
LQAWKRSRKIQIAMDRFLLKLPIFGAVIEKATIARWTRTLSTMFAAGVPLVEALESVAGASGNQVFVEATQKIRGEVATG
TALTVAMQNSGRFPNMVLQMAAIGEESGSLDAMLGKVADFYESEVDDAVEALSSLMEPLIMVVLGTLIGGMVIAMYLPIF
KMGAVVG

Sequences:

>Translated_407_residues
MATAAKAVKDATFLWEGMDKRGKKVKGQIQAAGETLVNAQLRKQGIRVTKLKKQSNLFGGGKRITEKDVALFTRQLATMM
KAGVPLLQSFEIVARGHSNPSMQRLLMEIKADIEKGSSLTQSFARHPLYFDALFCNLVGAGEAAGILEAVLDRLAVYKEK
ILAIKGKIKSALFYPVSIIVVAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWWAIFGGIGGGIYAF
LQAWKRSRKIQIAMDRFLLKLPIFGAVIEKATIARWTRTLSTMFAAGVPLVEALESVAGASGNQVFVEATQKIRGEVATG
TALTVAMQNSGRFPNMVLQMAAIGEESGSLDAMLGKVADFYESEVDDAVEALSSLMEPLIMVVLGTLIGGMVIAMYLPIF
KMGAVVG
>Mature_406_residues
ATAAKAVKDATFLWEGMDKRGKKVKGQIQAAGETLVNAQLRKQGIRVTKLKKQSNLFGGGKRITEKDVALFTRQLATMMK
AGVPLLQSFEIVARGHSNPSMQRLLMEIKADIEKGSSLTQSFARHPLYFDALFCNLVGAGEAAGILEAVLDRLAVYKEKI
LAIKGKIKSALFYPVSIIVVAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWWAIFGGIGGGIYAFL
QAWKRSRKIQIAMDRFLLKLPIFGAVIEKATIARWTRTLSTMFAAGVPLVEALESVAGASGNQVFVEATQKIRGEVATGT
ALTVAMQNSGRFPNMVLQMAAIGEESGSLDAMLGKVADFYESEVDDAVEALSSLMEPLIMVVLGTLIGGMVIAMYLPIFK
MGAVVG

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=406, Percent_Identity=27.3399014778325, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1786295, Length=397, Percent_Identity=28.463476070529, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44020; Mature: 43889

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATAAKAVKDATFLWEGMDKRGKKVKGQIQAAGETLVNAQLRKQGIRVTKLKKQSNLFGG
CCHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
GKRITEKDVALFTRQLATMMKAGVPLLQSFEIVARGHSNPSMQRLLMEIKADIEKGSSLT
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHH
QSFARHPLYFDALFCNLVGAGEAAGILEAVLDRLAVYKEKILAIKGKIKSALFYPVSIIV
HHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAFVITAIIMIFVIPAFKELFSSFGTDLPGPTLVVMAISDFFVTWWWAIFGGIGGGIYAF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LQAWKRSRKIQIAMDRFLLKLPIFGAVIEKATIARWTRTLSTMFAAGVPLVEALESVAGA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
SGNQVFVEATQKIRGEVATGTALTVAMQNSGRFPNMVLQMAAIGEESGSLDAMLGKVADF
CCCEEHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
YESEVDDAVEALSSLMEPLIMVVLGTLIGGMVIAMYLPIFKMGAVVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]