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The map label for this gene is ycfJ [H]

Identifier: 74318374

GI number: 74318374

Start: 2429992

End: 2430564

Strand: Direct

Name: ycfJ [H]

Synonym: Tbd_2356

Alternate gene names: 74318374

Gene position: 2429992-2430564 (Clockwise)

Preceding gene: 74318373

Following gene: 74318375

Centisome position: 83.51

GC content: 70.33

Gene sequence:

>573_bases
ATGACTGCACGCATCCCCACCCTGCTCGCGATCCTGCTCGCTGCAAGCGGCAGCGCCTACGCCGGGCATGGCCCCGGCGA
CGGCTTCACGACCCGCGCCCGCGTCGTGTCGAGCGTTCCGATCTACGAGAGCATCAGCGAGCCGCGCCGCGAGTGCTGGA
CCGAAACGGTCGGCTACGAGACGCGCAGCTATCGCGAAGGCAACGGCGGCGGCAGCGCGATCATCGGCGCAATCGCCGGC
GGCCTGCTCGGCTCGACCGTCGGCAAGGGCGACGGGCGCGTCGCCGCGGCCGCGGTCGGCGCGGCGACCGGCGCAGTCGT
CGGCGACCGCTGGAACCGCCCCGAGACGCGTTACGAATCGGTTCCCCAGGAGGTCGAACGCTGTCGCACCCGCTACGAGC
ATCGCGAGGTCATCGTCGGCTACGACGTGCGCTACCGCTTCCGCGGCCGCGAGTACAGCACGCGGCTCGATCACGATCCG
GGCAAATGGGTCCGGCTCGACGTCGATTTCAACGTCGCCGAAGGAAGCCGGTACACGCACCGGCCGAACGACTACGACCA
CTGGGGCGACTGA

Upstream 100 bases:

>100_bases
GCTACGGCTACGAGCGTCGGCAGCAACGCAGACACGAAAACGACGACCGTTCACGCGGCCGACACTGAAACGGCGAATCG
ACGCCATGAGGAGAGTAAGA

Downstream 100 bases:

>100_bases
GCTTTCCCCCGCCCGCCATCCCGAACCTCAAGGAGAAGATCATGCTACCCAAGCTTCTACTCGCCGCCACCCTGCTCGCC
TCATCGGCGTCAGCGTTCGC

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MTARIPTLLAILLAASGSAYAGHGPGDGFTTRARVVSSVPIYESISEPRRECWTETVGYETRSYREGNGGGSAIIGAIAG
GLLGSTVGKGDGRVAAAAVGAATGAVVGDRWNRPETRYESVPQEVERCRTRYEHREVIVGYDVRYRFRGREYSTRLDHDP
GKWVRLDVDFNVAEGSRYTHRPNDYDHWGD

Sequences:

>Translated_190_residues
MTARIPTLLAILLAASGSAYAGHGPGDGFTTRARVVSSVPIYESISEPRRECWTETVGYETRSYREGNGGGSAIIGAIAG
GLLGSTVGKGDGRVAAAAVGAATGAVVGDRWNRPETRYESVPQEVERCRTRYEHREVIVGYDVRYRFRGREYSTRLDHDP
GKWVRLDVDFNVAEGSRYTHRPNDYDHWGD
>Mature_189_residues
TARIPTLLAILLAASGSAYAGHGPGDGFTTRARVVSSVPIYESISEPRRECWTETVGYETRSYREGNGGGSAIIGAIAGG
LLGSTVGKGDGRVAAAAVGAATGAVVGDRWNRPETRYESVPQEVERCRTRYEHREVIVGYDVRYRFRGREYSTRLDHDPG
KWVRLDVDFNVAEGSRYTHRPNDYDHWGD

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Rickettsia 17 kDa surface antigen [H]

Homologues:

Organism=Escherichia coli, GI1787353, Length=135, Percent_Identity=34.8148148148148, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 20867; Mature: 20736

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARIPTLLAILLAASGSAYAGHGPGDGFTTRARVVSSVPIYESISEPRRECWTETVGYE
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
TRSYREGNGGGSAIIGAIAGGLLGSTVGKGDGRVAAAAVGAATGAVVGDRWNRPETRYES
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCCEECCCCCCCHHHHHH
VPQEVERCRTRYEHREVIVGYDVRYRFRGREYSTRLDHDPGKWVRLDVDFNVAEGSRYTH
HHHHHHHHHHHHHHCEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC
RPNDYDHWGD
CCCCCCCCCC
>Mature Secondary Structure 
TARIPTLLAILLAASGSAYAGHGPGDGFTTRARVVSSVPIYESISEPRRECWTETVGYE
CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
TRSYREGNGGGSAIIGAIAGGLLGSTVGKGDGRVAAAAVGAATGAVVGDRWNRPETRYES
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCCEECCCCCCCHHHHHH
VPQEVERCRTRYEHREVIVGYDVRYRFRGREYSTRLDHDPGKWVRLDVDFNVAEGSRYTH
HHHHHHHHHHHHHHCEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC
RPNDYDHWGD
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]