| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is phnJ [H]
Identifier: 74318311
GI number: 74318311
Start: 2367345
End: 2368244
Strand: Reverse
Name: phnJ [H]
Synonym: Tbd_2293
Alternate gene names: 74318311
Gene position: 2368244-2367345 (Counterclockwise)
Preceding gene: 74318312
Following gene: 74318310
Centisome position: 81.39
GC content: 66.33
Gene sequence:
>900_bases ATGAACGCCATGCCCCACACCACCGGCGGCAACGCCTACAACTTCGGCTTCCTCGACGAATACGCCAAGAAGGAAATCCG CCGCGCCGTCCTCAAGGCCATCGCCATCCCCGGCTACCAGGTGCCCTACGCCTCGCGCGAAATGCCCATGGGACGCGGCT TCGGCACCGGCGGCCTGCAACTGACGCTGGCCCTGATCGGTCCCGGCGAGGTGGTCAAGGTCATCGACCAGGGTTCGGAC GATTCGGTGAACGCGGTCAATCTGCGCCGGTTCATCGAAATGACCTGCCCCGGCGTCTCCACCACCACCCGCACCGCGGA GGCGAGCCTGATCCAGTCGCGCCACCGCATCCCGGAACGGCCGCTGACCCCGACGCAGATCCTCGTGCTGCAAGTGCCTT ACCCGGACCCGCTGGTGGTGGTCGAGCCGTCCGAGGACAAGCGCAAGATCATGCACGGCGAGGCCGACTATTCGCGCCTG CTGGTGAAGCTGTACGAGGACATCGTCCAGTTCGACGAGATCACCATCTCGCACCGCTATCCGACGCGCATCAACGGCCA CTACGTCATCGACCCCTCGCCGATTCCGCGCTGGGACGTGCCCAGGCTCGACCATGCGGCGGCGCTGACCCTGTTCGGCG CCGGGCGCGAGAAGAAGATTTACGCGGTGCCGCCGCACACTCGCGCGGAGCCGCTGGCGTTTTCCGACGTGCCGTTCCGG GTCGAGGATTTCCGCGACGAGGCGGGACGCCGCCGCGCCTGCGCGCGCTGCGGCTGCACGGATTCCTTTCTCGACGAGTT CAGCAGCGATGCCGGCGAGAAGGTCTACCAATGCTCGGACACCGACTGGTGCGACGAAAAACTGCTGCGCAAGGAATCGC TGCGGGGAGAAGCGGCATGA
Upstream 100 bases:
>100_bases CCATGGGCTTCGCCTCGCACTACAAGATGCCGCACTACGTCACCTTCCAGTCCGACCTGGACCGGCTGCGCACCACGCAG CAGAAGTCGGGAGAACCCGC
Downstream 100 bases:
>100_bases ATAAAATTCTCGAAGTCAGGAATCTGTCGAAAATCTACGGCCCCGGCTGCCCGCACTGCATCGAATCGACCGGGCCGGAA GCGGACACCAACCTGTGCCC
Product: phosphonate metabolism protein PhnJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MNAMPHTTGGNAYNFGFLDEYAKKEIRRAVLKAIAIPGYQVPYASREMPMGRGFGTGGLQLTLALIGPGEVVKVIDQGSD DSVNAVNLRRFIEMTCPGVSTTTRTAEASLIQSRHRIPERPLTPTQILVLQVPYPDPLVVVEPSEDKRKIMHGEADYSRL LVKLYEDIVQFDEITISHRYPTRINGHYVIDPSPIPRWDVPRLDHAAALTLFGAGREKKIYAVPPHTRAEPLAFSDVPFR VEDFRDEAGRRRACARCGCTDSFLDEFSSDAGEKVYQCSDTDWCDEKLLRKESLRGEAA
Sequences:
>Translated_299_residues MNAMPHTTGGNAYNFGFLDEYAKKEIRRAVLKAIAIPGYQVPYASREMPMGRGFGTGGLQLTLALIGPGEVVKVIDQGSD DSVNAVNLRRFIEMTCPGVSTTTRTAEASLIQSRHRIPERPLTPTQILVLQVPYPDPLVVVEPSEDKRKIMHGEADYSRL LVKLYEDIVQFDEITISHRYPTRINGHYVIDPSPIPRWDVPRLDHAAALTLFGAGREKKIYAVPPHTRAEPLAFSDVPFR VEDFRDEAGRRRACARCGCTDSFLDEFSSDAGEKVYQCSDTDWCDEKLLRKESLRGEAA >Mature_299_residues MNAMPHTTGGNAYNFGFLDEYAKKEIRRAVLKAIAIPGYQVPYASREMPMGRGFGTGGLQLTLALIGPGEVVKVIDQGSD DSVNAVNLRRFIEMTCPGVSTTTRTAEASLIQSRHRIPERPLTPTQILVLQVPYPDPLVVVEPSEDKRKIMHGEADYSRL LVKLYEDIVQFDEITISHRYPTRINGHYVIDPSPIPRWDVPRLDHAAALTLFGAGREKKIYAVPPHTRAEPLAFSDVPFR VEDFRDEAGRRRACARCGCTDSFLDEFSSDAGEKVYQCSDTDWCDEKLLRKESLRGEAA
Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known [H]
COG id: COG3627
COG function: function code P; Uncharacterized enzyme of phosphonate metabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phnJ family [H]
Homologues:
Organism=Escherichia coli, GI1790536, Length=278, Percent_Identity=54.6762589928058, Blast_Score=314, Evalue=5e-87,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010306 [H]
Pfam domain/function: PF06007 PhnJ [H]
EC number: NA
Molecular weight: Translated: 33439; Mature: 33439
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAMPHTTGGNAYNFGFLDEYAKKEIRRAVLKAIAIPGYQVPYASREMPMGRGFGTGGLQ CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE LTLALIGPGEVVKVIDQGSDDSVNAVNLRRFIEMTCPGVSTTTRTAEASLIQSRHRIPER EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC PLTPTQILVLQVPYPDPLVVVEPSEDKRKIMHGEADYSRLLVKLYEDIVQFDEITISHRY CCCCCEEEEEEECCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCC PTRINGHYVIDPSPIPRWDVPRLDHAAALTLFGAGREKKIYAVPPHTRAEPLAFSDVPFR CCCCCCEEEECCCCCCCCCCCCCCHHHEEEEEECCCCCEEEECCCCCCCCCCEECCCCCH VEDFRDEAGRRRACARCGCTDSFLDEFSSDAGEKVYQCSDTDWCDEKLLRKESLRGEAA HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNAMPHTTGGNAYNFGFLDEYAKKEIRRAVLKAIAIPGYQVPYASREMPMGRGFGTGGLQ CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE LTLALIGPGEVVKVIDQGSDDSVNAVNLRRFIEMTCPGVSTTTRTAEASLIQSRHRIPER EEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC PLTPTQILVLQVPYPDPLVVVEPSEDKRKIMHGEADYSRLLVKLYEDIVQFDEITISHRY CCCCCEEEEEEECCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHEEEECCC PTRINGHYVIDPSPIPRWDVPRLDHAAALTLFGAGREKKIYAVPPHTRAEPLAFSDVPFR CCCCCCEEEECCCCCCCCCCCCCCHHHEEEEEECCCCCEEEECCCCCCCCCCEECCCCCH VEDFRDEAGRRRACARCGCTDSFLDEFSSDAGEKVYQCSDTDWCDEKLLRKESLRGEAA HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]