Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is osmY [C]

Identifier: 74318269

GI number: 74318269

Start: 2325986

End: 2326297

Strand: Reverse

Name: osmY [C]

Synonym: Tbd_2251

Alternate gene names: 74318269

Gene position: 2326297-2325986 (Counterclockwise)

Preceding gene: 74318270

Following gene: 74318268

Centisome position: 79.95

GC content: 65.06

Gene sequence:

>312_bases
ATGGCGACCGGAAAACTCATTGCCGCGGTATTCGTCGCGAGCACGCTCGGCCTTGCGGGTTGCGCGGTCACGCGCGACCA
GTCGACGGTCGGCCAGTTCGTCGACGACTCGGCGATCACGACCCAGGTCAAGGCACGCTTTGCCGAAAGCCCCGTCGTCA
GTGCGATGGCGATCAAGGTCAAGACGCTCAACGGCACCGTGCAGCTATCGGGCTTCGCCAAGAACGCCAGCGAGCGCGAG
GCGGCCGAGTCGATCGCCCGCAGCGTCGCCAACGTCAAGGACGTACGCAACGACATCGTCGTGCAACCCTGA

Upstream 100 bases:

>100_bases
CAGGTCAGCCGTCGTCGCGGCCTGACGACCAAGGCCTAAGCCTTAGTCGGGTCGCGCAAGGGGCGGGCGACGCCCGCCCC
GGAACAAAAAGGACATCATC

Downstream 100 bases:

>100_bases
GCGCGCGCAGGCGCACTTCACGAACACGCATTGGAAGGAGACAGCATGAACTGGGACATCATCCAAGGTAACTGGAAGCA
GGCCAAGGGCAAGCTCAAGG

Product: transport-associated

Products: NA

Alternate protein names: Periplasmatic Protein; Transport-Associated Protein

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKVKTLNGTVQLSGFAKNASERE
AAESIARSVANVKDVRNDIVVQP

Sequences:

>Translated_103_residues
MATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKVKTLNGTVQLSGFAKNASERE
AAESIARSVANVKDVRNDIVVQP
>Mature_102_residues
ATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKVKTLNGTVQLSGFAKNASEREA
AESIARSVANVKDVRNDIVVQP

Specific function: Unknown

COG id: COG2823

COG function: function code R; Predicted periplasmic or secreted lipoprotein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 780 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 160 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 80 Molecules/Cell In: Stati

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10667; Mature: 10536

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKV
CCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEE
KTLNGTVQLSGFAKNASEREAAESIARSVANVKDVRNDIVVQP
EECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKV
CCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEE
KTLNGTVQLSGFAKNASEREAAESIARSVANVKDVRNDIVVQP
EECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA