| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is osmY [C]
Identifier: 74318269
GI number: 74318269
Start: 2325986
End: 2326297
Strand: Reverse
Name: osmY [C]
Synonym: Tbd_2251
Alternate gene names: 74318269
Gene position: 2326297-2325986 (Counterclockwise)
Preceding gene: 74318270
Following gene: 74318268
Centisome position: 79.95
GC content: 65.06
Gene sequence:
>312_bases ATGGCGACCGGAAAACTCATTGCCGCGGTATTCGTCGCGAGCACGCTCGGCCTTGCGGGTTGCGCGGTCACGCGCGACCA GTCGACGGTCGGCCAGTTCGTCGACGACTCGGCGATCACGACCCAGGTCAAGGCACGCTTTGCCGAAAGCCCCGTCGTCA GTGCGATGGCGATCAAGGTCAAGACGCTCAACGGCACCGTGCAGCTATCGGGCTTCGCCAAGAACGCCAGCGAGCGCGAG GCGGCCGAGTCGATCGCCCGCAGCGTCGCCAACGTCAAGGACGTACGCAACGACATCGTCGTGCAACCCTGA
Upstream 100 bases:
>100_bases CAGGTCAGCCGTCGTCGCGGCCTGACGACCAAGGCCTAAGCCTTAGTCGGGTCGCGCAAGGGGCGGGCGACGCCCGCCCC GGAACAAAAAGGACATCATC
Downstream 100 bases:
>100_bases GCGCGCGCAGGCGCACTTCACGAACACGCATTGGAAGGAGACAGCATGAACTGGGACATCATCCAAGGTAACTGGAAGCA GGCCAAGGGCAAGCTCAAGG
Product: transport-associated
Products: NA
Alternate protein names: Periplasmatic Protein; Transport-Associated Protein
Number of amino acids: Translated: 103; Mature: 102
Protein sequence:
>103_residues MATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKVKTLNGTVQLSGFAKNASERE AAESIARSVANVKDVRNDIVVQP
Sequences:
>Translated_103_residues MATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKVKTLNGTVQLSGFAKNASERE AAESIARSVANVKDVRNDIVVQP >Mature_102_residues ATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKVKTLNGTVQLSGFAKNASEREA AESIARSVANVKDVRNDIVVQP
Specific function: Unknown
COG id: COG2823
COG function: function code R; Predicted periplasmic or secreted lipoprotein
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 2960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 780 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 160 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 80 Molecules/Cell In: Stati
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10667; Mature: 10536
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50914 BON
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKV CCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEE KTLNGTVQLSGFAKNASEREAAESIARSVANVKDVRNDIVVQP EECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ATGKLIAAVFVASTLGLAGCAVTRDQSTVGQFVDDSAITTQVKARFAESPVVSAMAIKV CCHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEEE KTLNGTVQLSGFAKNASEREAAESIARSVANVKDVRNDIVVQP EECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA