Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 74318233

GI number: 74318233

Start: 2293449

End: 2294180

Strand: Reverse

Name: yebC [C]

Synonym: Tbd_2215

Alternate gene names: 74318233

Gene position: 2294180-2293449 (Counterclockwise)

Preceding gene: 74318235

Following gene: 74318232

Centisome position: 78.84

GC content: 63.93

Gene sequence:

>732_bases
ATGGCAGGACATTCGAAGTGGGCCAACATCCAGCACCGCAAGGGTCGCCAGGATGCCAAGCGCGGCAAGATCTTCACCAA
GCTTATCAAGGAAATCACGGTCGCCGCGAAGATGGGTGGCGGTGATCCAGCGATGAACCCGCGCCTGCGCCTCGCGATCG
AGAAAGGCAAGGCCGAGTCGCTGCCGAAGGACAACATCGAGAACGCGATCAAGCGCGGCACCGGCCAGCTCGAAGGCGTG
AACTATGAGGAGGCGCGCTACGAGGGCTACGGCATCGGTGGCGTAGCAGTGATGGTCGACTGCCTGACCGACAACAAGAC
GCGCACCGTCGCCGACGTGCGCCACGCCTTCACCAAGCACGGCGGCAACATGGGCACCGACGGTTGCGTCGCCTTCCAGT
TCAAGCATGTCGGGCAGATCGTGCTCGAGCCCGGCGCGAGCGAAGAGGCGGTCATGGAAGCCGCGCTCGACGCCGGCGCG
GACGACGTGATCCCCAATGACGACGGATCGATCGAGGTCCTGACCTCGCCCGACCCCAAGGCCTTCGAAGCGGTCAAAGA
GGCACTCGAGAAAGCCGGTTTCAAACCAGCCGTCGCCGAAATCACGATGCGGCCCGAAGCCGAGACCGAACTCGCCGGCG
ACGACGCCGCGAAGATGCAGAAGATCCTGGACGCGCTCGAAAGCCTCGACGACGTGCAGGAGGTCTACACCAACGCCGTG
TTGCCGGACTAG

Upstream 100 bases:

>100_bases
GCGATGAGTTCGATTTTGCTGCCGCCGAGGTCGATGCCGAAACGGAGGGAAGGGGCCACGGTGTAAAATCTCCGGCTATT
CAAATTGCGTTGGAATCGAC

Downstream 100 bases:

>100_bases
GCGTCTTTGCGCATCCTCGGCATCGATCCCGGCCTCAGGCTCACCGGCTTCGGCCTGATCGAGCAGACCGGGCAGAAGCT
CGCCTACGTCGCGAGCGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MAGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVAAKMGGGDPAMNPRLRLAIEKGKAESLPKDNIENAIKRGTGQLEGV
NYEEARYEGYGIGGVAVMVDCLTDNKTRTVADVRHAFTKHGGNMGTDGCVAFQFKHVGQIVLEPGASEEAVMEAALDAGA
DDVIPNDDGSIEVLTSPDPKAFEAVKEALEKAGFKPAVAEITMRPEAETELAGDDAAKMQKILDALESLDDVQEVYTNAV
LPD

Sequences:

>Translated_243_residues
MAGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVAAKMGGGDPAMNPRLRLAIEKGKAESLPKDNIENAIKRGTGQLEGV
NYEEARYEGYGIGGVAVMVDCLTDNKTRTVADVRHAFTKHGGNMGTDGCVAFQFKHVGQIVLEPGASEEAVMEAALDAGA
DDVIPNDDGSIEVLTSPDPKAFEAVKEALEKAGFKPAVAEITMRPEAETELAGDDAAKMQKILDALESLDDVQEVYTNAV
LPD
>Mature_242_residues
AGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVAAKMGGGDPAMNPRLRLAIEKGKAESLPKDNIENAIKRGTGQLEGVN
YEEARYEGYGIGGVAVMVDCLTDNKTRTVADVRHAFTKHGGNMGTDGCVAFQFKHVGQIVLEPGASEEAVMEAALDAGAD
DVIPNDDGSIEVLTSPDPKAFEAVKEALEKAGFKPAVAEITMRPEAETELAGDDAAKMQKILDALESLDDVQEVYTNAVL
PD

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=247, Percent_Identity=30.7692307692308, Blast_Score=116, Evalue=2e-26,
Organism=Escherichia coli, GI1788171, Length=243, Percent_Identity=52.2633744855967, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1788294, Length=236, Percent_Identity=36.864406779661, Blast_Score=135, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17556100, Length=248, Percent_Identity=27.4193548387097, Blast_Score=85, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=34.8484848484849, Blast_Score=133, Evalue=3e-32,
Organism=Drosophila melanogaster, GI24583305, Length=250, Percent_Identity=27.2, Blast_Score=91, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2215_THIDA (Q3SGS9)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_315973.1
- ProteinModelPortal:   Q3SGS9
- SMR:   Q3SGS9
- STRING:   Q3SGS9
- GeneID:   3671606
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2215
- NMPDR:   fig|292415.3.peg.2146
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   Q3SGS9
- ProtClustDB:   PRK00110
- BioCyc:   TDEN292415:TBD_2215-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26062; Mature: 25931

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVAAKMGGGDPAMNPRLRLAIEKGKAES
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC
LPKDNIENAIKRGTGQLEGVNYEEARYEGYGIGGVAVMVDCLTDNKTRTVADVRHAFTKH
CCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
GGNMGTDGCVAFQFKHVGQIVLEPGASEEAVMEAALDAGADDVIPNDDGSIEVLTSPDPK
CCCCCCCCEEEEEHHHCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCH
AFEAVKEALEKAGFKPAVAEITMRPEAETELAGDDAAKMQKILDALESLDDVQEVYTNAV
HHHHHHHHHHHCCCCCCHHHEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
LPD
CCC
>Mature Secondary Structure 
AGHSKWANIQHRKGRQDAKRGKIFTKLIKEITVAAKMGGGDPAMNPRLRLAIEKGKAES
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCC
LPKDNIENAIKRGTGQLEGVNYEEARYEGYGIGGVAVMVDCLTDNKTRTVADVRHAFTKH
CCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
GGNMGTDGCVAFQFKHVGQIVLEPGASEEAVMEAALDAGADDVIPNDDGSIEVLTSPDPK
CCCCCCCCEEEEEHHHCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCH
AFEAVKEALEKAGFKPAVAEITMRPEAETELAGDDAAKMQKILDALESLDDVQEVYTNAV
HHHHHHHHHHHCCCCCCHHHEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
LPD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA