Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74318200

Identifier: 74318200

GI number: 74318200

Start: 2265058

End: 2266302

Strand: Direct

Name: 74318200

Synonym: Tbd_2182

Alternate gene names: NA

Gene position: 2265058-2266302 (Clockwise)

Preceding gene: 74318195

Following gene: 74318207

Centisome position: 77.84

GC content: 65.14

Gene sequence:

>1245_bases
ATGAAACGCGTCGATGATTTCCGCCTCAATTTCGGCAACAAAGAACTGGTGCCGATCGTCATCGGCGGGATGGGGGTCGA
CATCTCGACCGCGGAACTCGCGCTCGAAGCCGCCCGCCTCGGCGGCATCGGCCACATTTCCGACGCGATGGTGCAGACCG
TCTCGGACCGGCGCTTCGACACCAACTTCGTCAGCCAGAAGCTCAAGACCTACAAGGCCAACGTCGCGAGCAGCGACAAA
TCCGAGGTGCACTTCAATCTCGGCGTGCTCGAGGAAGCCACGCGCAATCACGTCGGCCGCACGATGGACGCCAAGCGCGG
CGACGGCATGATCTTCATCAACTGCATGGAGAAGCTGACGATGAACGCGCCGCGCGAGACGCTGCGCGTTCGCCTGTCGG
CCGCACTCGACGCGGGGATCGACGGCATCACGCTCTCCGCGGGTCTGCATCTCGGCTCGTTCGCGCTGATCGAGGACCAT
CCGCGCTTCCGCGACGCGCGGCTCGGCATCATCGTCTCGTCGCCGCGCGCGCTCGCGATGTTCCTGCGCAAGAACGCGCG
CCTGCAGCGCCTGCCCGACTTCGTCGTGGTCGAGGGCCCGCTGGCCGGCGGCCATCTCGGCTTCGGCCTCGACTGGGCGC
AGTACGAGCTCGCGACGATCGTCGCCGAGGTGCAGGCCTATCTGCAGAGCGAACACCTGGACATCCCGGTCATCGCCGCG
GGCGGGATCTTCACCGGCAGCGACGCCGCGGCCTTTCTCGAGCAGGGCGCCGCGGCGGTGCAGGTCGCCACGCGTTTCAC
CGTCACGCGCGAATGCGGCCTGCCCGACAAGGTCAAGCAGGAGTACTTCAAGGCGAGCGAGGAAGACATCGAGGTCAACA
CGATCTCGCCGACCGGCTATCCCATGCGCATGCTCAAGGGCAGCCCGGGAATCGGCGCCGGCATCCGCCCGAATTGCGAG
GCCTACGGCTACCTGCTCGATGCCAACGGCCGCTGCGCCTACATCGACGCGTACAACCGCCAGGTCGAACTGCAGCCCGA
CGCGAAGAAAATTTCGGTCATGGAAAAAACCTGCCTGTGCACGCACATGCGCAACTTCGACATCTGGACCTGCGGGCAGA
CCGCCTATCGGCTCAAGGACACCACCACGCGTGCCGACGACGGCAGCTACCGGATCCTGAGCGCCGAGCACGTATTCAAC
GACTATCAATTCAGCGTCGACGACAAAGTCGCGCTGCCTGCCTGA

Upstream 100 bases:

>100_bases
CTTGTTTCCGCGCGCAGATTTCGCGCGAAGCCACAGTCCCGGCCGCGCGCCGGCACGAACACTCGCCTCTCATCAGAATG
TCAACCGGTTTAAAGCTCAA

Downstream 100 bases:

>100_bases
CCGCGTCCACGGCGACAGCGCCGCGGCCCTAGGCCGCGAGCACCCGGCGCGCAAGGCGCGCGAGCGGCGCCGGTAGTTGC
GCGAGAACGGCGTCGGGGTC

Product: putative dioxygenase related to 2-nitropropane dioxygenase

Products: NA

Alternate protein names: 2-Nitropropane Dioxygenase; Oxidoreductase 2-Nitropropane Dioxygenase Family; 2-Nitropropane Dioxygenase Family Oxidoreductase; Enoyl-(Acyl-Carrier-Protein) Reductase II; Oxidoreductase; Dioxygenase Related 2-Nitropropane Dioxygenase; Oxidoreductase 2-Nitropropane Dioxygenase Family Protein; 2-Nitropropane Dioxygenase Npd; 2-Nitropropane Dioxygenase-Like Protein; Dioxygenases Related 2-Nitropropane Dioxygenase; 2-Nitropropane Dioxygenase Family; Flavin-Containing Oxidoreductase; Enoyl-[Acyl-Carrier Protein] Reductase; Dioxygenase; 2-Nitropropane Dioxygenase-Like Dioxygenase

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFDTNFVSQKLKTYKANVASSDK
SEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLTMNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDH
PRFRDARLGIIVSSPRALAMFLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA
GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGYPMRMLKGSPGIGAGIRPNCE
AYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLCTHMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFN
DYQFSVDDKVALPA

Sequences:

>Translated_414_residues
MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFDTNFVSQKLKTYKANVASSDK
SEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLTMNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDH
PRFRDARLGIIVSSPRALAMFLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA
GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGYPMRMLKGSPGIGAGIRPNCE
AYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLCTHMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFN
DYQFSVDDKVALPA
>Mature_414_residues
MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFDTNFVSQKLKTYKANVASSDK
SEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLTMNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDH
PRFRDARLGIIVSSPRALAMFLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA
GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGYPMRMLKGSPGIGAGIRPNCE
AYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLCTHMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFN
DYQFSVDDKVALPA

Specific function: Unknown

COG id: COG2070

COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45380; Mature: 45380

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00912 DHODEHASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFD
CCCCCCEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
TNFVSQKLKTYKANVASSDKSEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLT
HHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHH
MNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDHPRFRDARLGIIVSSPRALAM
CCCCHHHHHEEEEHHHHCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCHHHHH
FLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA
HHHCCCHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGY
CCEEECCHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC
PMRMLKGSPGIGAGIRPNCEAYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLC
CHHEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECCCHHHHHHHHHHHHH
THMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFNDYQFSVDDKVALPA
HHCCCCCEEECCCCEEEEECCCCCCCCCCEEEEEHHHHCCCEEECCCCEEECCC
>Mature Secondary Structure
MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFD
CCCCCCEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
TNFVSQKLKTYKANVASSDKSEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLT
HHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHH
MNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDHPRFRDARLGIIVSSPRALAM
CCCCHHHHHEEEEHHHHCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCHHHHH
FLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA
HHHCCCHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGY
CCEEECCHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC
PMRMLKGSPGIGAGIRPNCEAYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLC
CHHEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECCCHHHHHHHHHHHHH
THMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFNDYQFSVDDKVALPA
HHCCCCCEEECCCCEEEEECCCCCCCCCCEEEEEHHHHCCCEEECCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA