| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318200
Identifier: 74318200
GI number: 74318200
Start: 2265058
End: 2266302
Strand: Direct
Name: 74318200
Synonym: Tbd_2182
Alternate gene names: NA
Gene position: 2265058-2266302 (Clockwise)
Preceding gene: 74318195
Following gene: 74318207
Centisome position: 77.84
GC content: 65.14
Gene sequence:
>1245_bases ATGAAACGCGTCGATGATTTCCGCCTCAATTTCGGCAACAAAGAACTGGTGCCGATCGTCATCGGCGGGATGGGGGTCGA CATCTCGACCGCGGAACTCGCGCTCGAAGCCGCCCGCCTCGGCGGCATCGGCCACATTTCCGACGCGATGGTGCAGACCG TCTCGGACCGGCGCTTCGACACCAACTTCGTCAGCCAGAAGCTCAAGACCTACAAGGCCAACGTCGCGAGCAGCGACAAA TCCGAGGTGCACTTCAATCTCGGCGTGCTCGAGGAAGCCACGCGCAATCACGTCGGCCGCACGATGGACGCCAAGCGCGG CGACGGCATGATCTTCATCAACTGCATGGAGAAGCTGACGATGAACGCGCCGCGCGAGACGCTGCGCGTTCGCCTGTCGG CCGCACTCGACGCGGGGATCGACGGCATCACGCTCTCCGCGGGTCTGCATCTCGGCTCGTTCGCGCTGATCGAGGACCAT CCGCGCTTCCGCGACGCGCGGCTCGGCATCATCGTCTCGTCGCCGCGCGCGCTCGCGATGTTCCTGCGCAAGAACGCGCG CCTGCAGCGCCTGCCCGACTTCGTCGTGGTCGAGGGCCCGCTGGCCGGCGGCCATCTCGGCTTCGGCCTCGACTGGGCGC AGTACGAGCTCGCGACGATCGTCGCCGAGGTGCAGGCCTATCTGCAGAGCGAACACCTGGACATCCCGGTCATCGCCGCG GGCGGGATCTTCACCGGCAGCGACGCCGCGGCCTTTCTCGAGCAGGGCGCCGCGGCGGTGCAGGTCGCCACGCGTTTCAC CGTCACGCGCGAATGCGGCCTGCCCGACAAGGTCAAGCAGGAGTACTTCAAGGCGAGCGAGGAAGACATCGAGGTCAACA CGATCTCGCCGACCGGCTATCCCATGCGCATGCTCAAGGGCAGCCCGGGAATCGGCGCCGGCATCCGCCCGAATTGCGAG GCCTACGGCTACCTGCTCGATGCCAACGGCCGCTGCGCCTACATCGACGCGTACAACCGCCAGGTCGAACTGCAGCCCGA CGCGAAGAAAATTTCGGTCATGGAAAAAACCTGCCTGTGCACGCACATGCGCAACTTCGACATCTGGACCTGCGGGCAGA CCGCCTATCGGCTCAAGGACACCACCACGCGTGCCGACGACGGCAGCTACCGGATCCTGAGCGCCGAGCACGTATTCAAC GACTATCAATTCAGCGTCGACGACAAAGTCGCGCTGCCTGCCTGA
Upstream 100 bases:
>100_bases CTTGTTTCCGCGCGCAGATTTCGCGCGAAGCCACAGTCCCGGCCGCGCGCCGGCACGAACACTCGCCTCTCATCAGAATG TCAACCGGTTTAAAGCTCAA
Downstream 100 bases:
>100_bases CCGCGTCCACGGCGACAGCGCCGCGGCCCTAGGCCGCGAGCACCCGGCGCGCAAGGCGCGCGAGCGGCGCCGGTAGTTGC GCGAGAACGGCGTCGGGGTC
Product: putative dioxygenase related to 2-nitropropane dioxygenase
Products: NA
Alternate protein names: 2-Nitropropane Dioxygenase; Oxidoreductase 2-Nitropropane Dioxygenase Family; 2-Nitropropane Dioxygenase Family Oxidoreductase; Enoyl-(Acyl-Carrier-Protein) Reductase II; Oxidoreductase; Dioxygenase Related 2-Nitropropane Dioxygenase; Oxidoreductase 2-Nitropropane Dioxygenase Family Protein; 2-Nitropropane Dioxygenase Npd; 2-Nitropropane Dioxygenase-Like Protein; Dioxygenases Related 2-Nitropropane Dioxygenase; 2-Nitropropane Dioxygenase Family; Flavin-Containing Oxidoreductase; Enoyl-[Acyl-Carrier Protein] Reductase; Dioxygenase; 2-Nitropropane Dioxygenase-Like Dioxygenase
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFDTNFVSQKLKTYKANVASSDK SEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLTMNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDH PRFRDARLGIIVSSPRALAMFLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGYPMRMLKGSPGIGAGIRPNCE AYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLCTHMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFN DYQFSVDDKVALPA
Sequences:
>Translated_414_residues MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFDTNFVSQKLKTYKANVASSDK SEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLTMNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDH PRFRDARLGIIVSSPRALAMFLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGYPMRMLKGSPGIGAGIRPNCE AYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLCTHMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFN DYQFSVDDKVALPA >Mature_414_residues MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFDTNFVSQKLKTYKANVASSDK SEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLTMNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDH PRFRDARLGIIVSSPRALAMFLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGYPMRMLKGSPGIGAGIRPNCE AYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLCTHMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFN DYQFSVDDKVALPA
Specific function: Unknown
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45380; Mature: 45380
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS00912 DHODEHASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFD CCCCCCEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC TNFVSQKLKTYKANVASSDKSEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLT HHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHH MNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDHPRFRDARLGIIVSSPRALAM CCCCHHHHHEEEEHHHHCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCHHHHH FLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA HHHCCCHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGY CCEEECCHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC PMRMLKGSPGIGAGIRPNCEAYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLC CHHEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECCCHHHHHHHHHHHHH THMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFNDYQFSVDDKVALPA HHCCCCCEEECCCCEEEEECCCCCCCCCCEEEEEHHHHCCCEEECCCCEEECCC >Mature Secondary Structure MKRVDDFRLNFGNKELVPIVIGGMGVDISTAELALEAARLGGIGHISDAMVQTVSDRRFD CCCCCCEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC TNFVSQKLKTYKANVASSDKSEVHFNLGVLEEATRNHVGRTMDAKRGDGMIFINCMEKLT HHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHH MNAPRETLRVRLSAALDAGIDGITLSAGLHLGSFALIEDHPRFRDARLGIIVSSPRALAM CCCCHHHHHEEEEHHHHCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEEEEECCHHHHH FLRKNARLQRLPDFVVVEGPLAGGHLGFGLDWAQYELATIVAEVQAYLQSEHLDIPVIAA HHHCCCHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE GGIFTGSDAAAFLEQGAAAVQVATRFTVTRECGLPDKVKQEYFKASEEDIEVNTISPTGY CCEEECCHHHHHHHCCCCEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCC PMRMLKGSPGIGAGIRPNCEAYGYLLDANGRCAYIDAYNRQVELQPDAKKISVMEKTCLC CHHEECCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEECCCHHHHHHHHHHHHH THMRNFDIWTCGQTAYRLKDTTTRADDGSYRILSAEHVFNDYQFSVDDKVALPA HHCCCCCEEECCCCEEEEECCCCCCCCCCEEEEEHHHHCCCEEECCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA