| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is 74318182
Identifier: 74318182
GI number: 74318182
Start: 2249008
End: 2250078
Strand: Reverse
Name: 74318182
Synonym: Tbd_2164
Alternate gene names: NA
Gene position: 2250078-2249008 (Counterclockwise)
Preceding gene: 74318188
Following gene: 74318181
Centisome position: 77.33
GC content: 67.41
Gene sequence:
>1071_bases ATGCAAAGACGAGATTTCCTGAGCGGCGCCGCGGTCGCCGCCGTGCTGCCCGTGAGCGCACGGGCAGCGACCGAGCCCGT CGTCCGCTGGCGCCTCGCGTCGAGCTTTCCGAAGAGCCTAGACACGATCTACGGCGCCGGGGAGACGCTGGCCAAGCGCG TCGCCGCGCTGACCGGCGGAAAGTTCCAGATCCGCGTCTTCGCCGGCGGCGAACTGGTGCCCGGCCTGCAGGTGCTCGAC GCGGTCGGCAACGGCACGGCCGAATGCGGCCATTCGGCGGGCTATTACTACGTCGGCAAGAACCTCGCGCTCGCGTTCGA CACGGCGGTGCCCTTCGGCCTCACGGCGCGCCAGCAGAACGCCTGGATGTACGCGGGCGGCGGCATCGAGGCGCTGCGCA AGCTCTACGCCAAGTACAAGGTCCTGCAGTTCCCGGGCGGCAACACCGGCACCCAGATGGGCGGCTGGTTCAGGAAGCCG ATCAAGTCGCTCGCCGATCTGCGCGGGCTCAAGATGCGCATCCCGGGCATCGGCGGCCAGATCATGGCGAAGCTCGGCGC CGTGCCGCAGACCCTGCCCGGCGGCGACATCTATCCTGCGCTCGAACGCGGCGCGCTCGACGCGGCCGAATGGGTCGGGC CCTACGACGACGAGAAGCTCGGCTTCCACAAGATCGCGAAGCACTACTACTACCCCGGCTGGTGGGAGGGCGGGCCGCAG CTCTCGTTCTACGTCAACCAGACGGCGTGGCAGGCTTTGCCAGAGCTGTACCGACAGGCGTTCGAGGCCGCGGCGGCCGA AGCCAACCAGCTCATGCTCGCGCAGTACGACGCCAAGAATCCGCCAGCCTTGCTGCGGCTGGTCGGGCAGGGCGTCAAGC TTCATCCTTACCCCAAGGATGTGATGCTCGCGGCGCGGCGCGCGACCTTCGAGCTCTACGAAGCCGAGGCGAAGACCAAC GCCGACTTCGCCGCGATCTACCGGCCGTGGAAGGCTTTCCGCGACACCGAATTCCAGTGGTTCAAGGTCAACGAGGCGGC CTACGCCAACTTCAACTACTACGTGAAGTGA
Upstream 100 bases:
>100_bases TGAACATGGCAGAGGGGGGGGGGCTTGAGAGGCGGCGATTTTATCACGCGGCGGTTTCGTCGAAGCGGCTCGTATAATCG GCGAAAAACCGGGACCAAGC
Downstream 100 bases:
>100_bases CCCGACAGGAGCAAACATGAATCGACTCGACCAACTGATCAGCACCTTCGATCTGGGTCTGCGCACGGTTTTCGCGACGC CGCACGCGGGCCGCCCCTAT
Product: transporter, periplasmic component
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; TRAP Dicarboxylate Transporter DctP Subunit; Tat Pathway Signal Sequence Domain-Containing Protein; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; C4-Dicarboxylate Transporter; TRAP Transporter; Tat Pathway Signal Sequence Domain-Containing; TRAP Dicarboxylate Transporter; TRAP Dicarboxylate Transporter- Dctp Subunit
Number of amino acids: Translated: 356; Mature: 356
Protein sequence:
>356_residues MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGGKFQIRVFAGGELVPGLQVLD AVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQNAWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKP IKSLADLRGLKMRIPGIGGQIMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKDVMLAARRATFELYEAEAKTN ADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK
Sequences:
>Translated_356_residues MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGGKFQIRVFAGGELVPGLQVLD AVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQNAWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKP IKSLADLRGLKMRIPGIGGQIMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKDVMLAARRATFELYEAEAKTN ADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK >Mature_356_residues MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGGKFQIRVFAGGELVPGLQVLD AVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQNAWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKP IKSLADLRGLKMRIPGIGGQIMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKDVMLAARRATFELYEAEAKTN ADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK
Specific function: Unknown
COG id: COG4663
COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39112; Mature: 39112
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGG CCCHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHCCC KFQIRVFAGGELVPGLQVLDAVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQN EEEEEEEECCCCCCHHHHHHHHCCCCHHCCCCCCEEEECCCEEEEEECCCCCCCEECCCC AWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKPIKSLADLRGLKMRIPGIGGQ CEEEECCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHH IMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ HHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCEECCCCE LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKD EEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCEECCCCHH VMLAARRATFELYEAEAKTNADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECEEEEEC >Mature Secondary Structure MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGG CCCHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHCCC KFQIRVFAGGELVPGLQVLDAVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQN EEEEEEEECCCCCCHHHHHHHHCCCCHHCCCCCCEEEECCCEEEEEECCCCCCCEECCCC AWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKPIKSLADLRGLKMRIPGIGGQ CEEEECCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHH IMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ HHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCEECCCCE LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKD EEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCEECCCCHH VMLAARRATFELYEAEAKTNADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA