Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is 74318182

Identifier: 74318182

GI number: 74318182

Start: 2249008

End: 2250078

Strand: Reverse

Name: 74318182

Synonym: Tbd_2164

Alternate gene names: NA

Gene position: 2250078-2249008 (Counterclockwise)

Preceding gene: 74318188

Following gene: 74318181

Centisome position: 77.33

GC content: 67.41

Gene sequence:

>1071_bases
ATGCAAAGACGAGATTTCCTGAGCGGCGCCGCGGTCGCCGCCGTGCTGCCCGTGAGCGCACGGGCAGCGACCGAGCCCGT
CGTCCGCTGGCGCCTCGCGTCGAGCTTTCCGAAGAGCCTAGACACGATCTACGGCGCCGGGGAGACGCTGGCCAAGCGCG
TCGCCGCGCTGACCGGCGGAAAGTTCCAGATCCGCGTCTTCGCCGGCGGCGAACTGGTGCCCGGCCTGCAGGTGCTCGAC
GCGGTCGGCAACGGCACGGCCGAATGCGGCCATTCGGCGGGCTATTACTACGTCGGCAAGAACCTCGCGCTCGCGTTCGA
CACGGCGGTGCCCTTCGGCCTCACGGCGCGCCAGCAGAACGCCTGGATGTACGCGGGCGGCGGCATCGAGGCGCTGCGCA
AGCTCTACGCCAAGTACAAGGTCCTGCAGTTCCCGGGCGGCAACACCGGCACCCAGATGGGCGGCTGGTTCAGGAAGCCG
ATCAAGTCGCTCGCCGATCTGCGCGGGCTCAAGATGCGCATCCCGGGCATCGGCGGCCAGATCATGGCGAAGCTCGGCGC
CGTGCCGCAGACCCTGCCCGGCGGCGACATCTATCCTGCGCTCGAACGCGGCGCGCTCGACGCGGCCGAATGGGTCGGGC
CCTACGACGACGAGAAGCTCGGCTTCCACAAGATCGCGAAGCACTACTACTACCCCGGCTGGTGGGAGGGCGGGCCGCAG
CTCTCGTTCTACGTCAACCAGACGGCGTGGCAGGCTTTGCCAGAGCTGTACCGACAGGCGTTCGAGGCCGCGGCGGCCGA
AGCCAACCAGCTCATGCTCGCGCAGTACGACGCCAAGAATCCGCCAGCCTTGCTGCGGCTGGTCGGGCAGGGCGTCAAGC
TTCATCCTTACCCCAAGGATGTGATGCTCGCGGCGCGGCGCGCGACCTTCGAGCTCTACGAAGCCGAGGCGAAGACCAAC
GCCGACTTCGCCGCGATCTACCGGCCGTGGAAGGCTTTCCGCGACACCGAATTCCAGTGGTTCAAGGTCAACGAGGCGGC
CTACGCCAACTTCAACTACTACGTGAAGTGA

Upstream 100 bases:

>100_bases
TGAACATGGCAGAGGGGGGGGGGCTTGAGAGGCGGCGATTTTATCACGCGGCGGTTTCGTCGAAGCGGCTCGTATAATCG
GCGAAAAACCGGGACCAAGC

Downstream 100 bases:

>100_bases
CCCGACAGGAGCAAACATGAATCGACTCGACCAACTGATCAGCACCTTCGATCTGGGTCTGCGCACGGTTTTCGCGACGC
CGCACGCGGGCCGCCCCTAT

Product: transporter, periplasmic component

Products: NA

Alternate protein names: Twin-Arginine Translocation Pathway Signal; TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; TRAP Dicarboxylate Transporter DctP Subunit; Tat Pathway Signal Sequence Domain-Containing Protein; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; C4-Dicarboxylate Transporter; TRAP Transporter; Tat Pathway Signal Sequence Domain-Containing; TRAP Dicarboxylate Transporter; TRAP Dicarboxylate Transporter- Dctp Subunit

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGGKFQIRVFAGGELVPGLQVLD
AVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQNAWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKP
IKSLADLRGLKMRIPGIGGQIMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ
LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKDVMLAARRATFELYEAEAKTN
ADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK

Sequences:

>Translated_356_residues
MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGGKFQIRVFAGGELVPGLQVLD
AVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQNAWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKP
IKSLADLRGLKMRIPGIGGQIMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ
LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKDVMLAARRATFELYEAEAKTN
ADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK
>Mature_356_residues
MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGGKFQIRVFAGGELVPGLQVLD
AVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQNAWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKP
IKSLADLRGLKMRIPGIGGQIMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ
LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKDVMLAARRATFELYEAEAKTN
ADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK

Specific function: Unknown

COG id: COG4663

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39112; Mature: 39112

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGG
CCCHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHCCC
KFQIRVFAGGELVPGLQVLDAVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQN
EEEEEEEECCCCCCHHHHHHHHCCCCHHCCCCCCEEEECCCEEEEEECCCCCCCEECCCC
AWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKPIKSLADLRGLKMRIPGIGGQ
CEEEECCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHH
IMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ
HHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCEECCCCE
LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKD
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCEECCCCHH
VMLAARRATFELYEAEAKTNADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECEEEEEC
>Mature Secondary Structure
MQRRDFLSGAAVAAVLPVSARAATEPVVRWRLASSFPKSLDTIYGAGETLAKRVAALTGG
CCCHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHCCC
KFQIRVFAGGELVPGLQVLDAVGNGTAECGHSAGYYYVGKNLALAFDTAVPFGLTARQQN
EEEEEEEECCCCCCHHHHHHHHCCCCHHCCCCCCEEEECCCEEEEEECCCCCCCEECCCC
AWMYAGGGIEALRKLYAKYKVLQFPGGNTGTQMGGWFRKPIKSLADLRGLKMRIPGIGGQ
CEEEECCCHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCHH
IMAKLGAVPQTLPGGDIYPALERGALDAAEWVGPYDDEKLGFHKIAKHYYYPGWWEGGPQ
HHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHCCCCEECCCCE
LSFYVNQTAWQALPELYRQAFEAAAAEANQLMLAQYDAKNPPALLRLVGQGVKLHPYPKD
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCEECCCCHH
VMLAARRATFELYEAEAKTNADFAAIYRPWKAFRDTEFQWFKVNEAAYANFNYYVK
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA