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The map label for this gene is secD [H]

Identifier: 74318097

GI number: 74318097

Start: 2171886

End: 2173700

Strand: Direct

Name: secD [H]

Synonym: Tbd_2079

Alternate gene names: 74318097

Gene position: 2171886-2173700 (Clockwise)

Preceding gene: 74318096

Following gene: 74318098

Centisome position: 74.64

GC content: 66.67

Gene sequence:

>1815_bases
ATGAACCGCTACCCGCTCTGGAAATACCTGCTCATCGGCGTCACGCTGGTGGTCGCATTCCTCTATACGCTGCCGAATTT
CTTCGGTGAGGTGCCCGCGGTCCAGGTTTCGCCCGTGCGCACGAGCGAAACGGTCGACACAGCCCTGCTCGGCCGCGTCG
AGGCGCTCCTGAAGACGGCGTCGCTGCCGACGAGCGGCGTGGAACTCGCGGGCAACAGCATCAAGGCGCGCTTCGCCAGC
ACCGACGTCCAGATCAAGGCCAAGGACGTGCTGCAGAACGGGCTCGGCGAGCGCTACACGGTCGCGCTGAATCTCGTCTC
GGCCTCCCCCGCGTGGCTCTCGACGCTCAACGCGCTGCCGATGTATCTGGGCCTCGACCTGCGCGGCGGCGTGCACTTCC
TGCTCGAAGTCGACATGAAGGCGGCACTCGAAAAAGCCGCTGTCCGCTACCAGAACGACTTCCGCACCGAGTTGCGGGGG
GACAAGATCCGCTACAGCCGGATCAGCCGCGAGGGCAACGCGGTCGTCGTCCGTTTCGCGACGCGTGACCAGCGTGACGC
GGCGGCGGACAAGCTCGCTGCGGTCTTCACCGACCTCGGCTTCGCGGCCGAAGACCTCGACGACGGCTTCCTGCTGACCG
CGCGCCTCAAGCCCGAAGCCGAGAAGCAGGTGCAGGAATTCGCGCTGCAGCAGAACATCACCACGCTGAGAAACCGCGTC
AACGAGCTCGGGGTCGCCGAACCCGTGATCCAGCAGCAGGGCGCCAATCGCGTCGTCGTGCAGCTGCCGGGCGTACAGGA
CACGGCCAAGGCCAAGGACATCCTCGGCCGCACGGCGACGCTCGAGGTGCGCATGGTCGACGAACAGGCCGATCCGCTGC
TCGTCGAACAGGGCCAGGCGCCATTCGGCGCCGAGATCGTCGCCAGCCGCGAAGGCGGCAAGATCGCGGTCAAGAAGGAC
GTCGTGCTGACCGGCGACTCGATCACGGACGCCGCCCCCGGTTTCGACAGCACGAGCGCGCAGGCGGCGGTGCACATCAA
CCTCGACGGCAAGGGCGCGCGCATCTTCAAGGACGTGACGCGTGAGAACGTCGGCAAGCGCATGGCGATCCTGCTGATCG
AAAAAGGTATCGCCGAGGCGATCACCGCGCCGGTCATCCGCGAGGAAATCGGCGGCGGCCGGGTCCAGATCACGGGCATG
GAGACGGCCCAGGAAGCTTCCGACGTCGCGCTGCTGCTGCGTGCCGGCGCGCTCGCCGCGCCGATGCAGATCGTCGAGGA
GCGCACGGTCGGACCGAGCATGGGCGCCGAAAACATCGAAAAAGGCTTCCATTCCAACATCTGGGGCTTCCTCGCTGTCG
TCGCGTTCATGACGATCTATTACCGCGTGTTCGGCCTCTTCTCGTCGGTCGCCCTGGCGATCAACGGCTTCTTCCTGATC
GCGCTGCTGTCGATGCTGCAGGCGACGCTGACGCTGCCCGGCATGGCCGCGATCGCGCTGACGCTCGGCATGGCGATCGA
CGCCAACGTGCTGATCAACGAGCGCATCCGCGAAGAGCTGCGCAACGGCGCGACGCCGCAGGCCGCGATCCACGCCGGCT
ACGACCGCGCCTGGGGCACGATTCTCGACTCCAACCTGACGACACTGATCGCGGGCATCGCGCTCTTCTGGCTCGGCTCG
GGCCCGGTGCGCGGCTTCGCCGTCGTGCTGTGCCTCGGCATCCTGACCTCGATGTTCAGCGCGGTGACGGTGTCGCGGGC
GATGGTCAACCTCACCTACGGCCGCCAGCCCCGTCTGGCCAAAGTTTCGATCTAA

Upstream 100 bases:

>100_bases
GAAGCAGTCGGTCCAGACGCTGCTGCCGAAGGGCACGATCAAGGGGCTCTAAGCCGAGACGGCACGCCGTTCTCTTTCGC
CACCCGCACTCGCCCGACAC

Downstream 100 bases:

>100_bases
GGGTTACGCGATGCTGGAATTATTCCCGTTCAAGAAAACCATCCCCTTCATGAGTTGGGGGAAGGCGACGACGGCGATTT
CGCTCCTGACTTTCCTGTTC

Product: preprotein translocase protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MNRYPLWKYLLIGVTLVVAFLYTLPNFFGEVPAVQVSPVRTSETVDTALLGRVEALLKTASLPTSGVELAGNSIKARFAS
TDVQIKAKDVLQNGLGERYTVALNLVSASPAWLSTLNALPMYLGLDLRGGVHFLLEVDMKAALEKAAVRYQNDFRTELRG
DKIRYSRISREGNAVVVRFATRDQRDAAADKLAAVFTDLGFAAEDLDDGFLLTARLKPEAEKQVQEFALQQNITTLRNRV
NELGVAEPVIQQQGANRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQGQAPFGAEIVASREGGKIAVKKD
VVLTGDSITDAAPGFDSTSAQAAVHINLDGKGARIFKDVTRENVGKRMAILLIEKGIAEAITAPVIREEIGGGRVQITGM
ETAQEASDVALLLRAGALAAPMQIVEERTVGPSMGAENIEKGFHSNIWGFLAVVAFMTIYYRVFGLFSSVALAINGFFLI
ALLSMLQATLTLPGMAAIALTLGMAIDANVLINERIREELRNGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGS
GPVRGFAVVLCLGILTSMFSAVTVSRAMVNLTYGRQPRLAKVSI

Sequences:

>Translated_604_residues
MNRYPLWKYLLIGVTLVVAFLYTLPNFFGEVPAVQVSPVRTSETVDTALLGRVEALLKTASLPTSGVELAGNSIKARFAS
TDVQIKAKDVLQNGLGERYTVALNLVSASPAWLSTLNALPMYLGLDLRGGVHFLLEVDMKAALEKAAVRYQNDFRTELRG
DKIRYSRISREGNAVVVRFATRDQRDAAADKLAAVFTDLGFAAEDLDDGFLLTARLKPEAEKQVQEFALQQNITTLRNRV
NELGVAEPVIQQQGANRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQGQAPFGAEIVASREGGKIAVKKD
VVLTGDSITDAAPGFDSTSAQAAVHINLDGKGARIFKDVTRENVGKRMAILLIEKGIAEAITAPVIREEIGGGRVQITGM
ETAQEASDVALLLRAGALAAPMQIVEERTVGPSMGAENIEKGFHSNIWGFLAVVAFMTIYYRVFGLFSSVALAINGFFLI
ALLSMLQATLTLPGMAAIALTLGMAIDANVLINERIREELRNGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGS
GPVRGFAVVLCLGILTSMFSAVTVSRAMVNLTYGRQPRLAKVSI
>Mature_604_residues
MNRYPLWKYLLIGVTLVVAFLYTLPNFFGEVPAVQVSPVRTSETVDTALLGRVEALLKTASLPTSGVELAGNSIKARFAS
TDVQIKAKDVLQNGLGERYTVALNLVSASPAWLSTLNALPMYLGLDLRGGVHFLLEVDMKAALEKAAVRYQNDFRTELRG
DKIRYSRISREGNAVVVRFATRDQRDAAADKLAAVFTDLGFAAEDLDDGFLLTARLKPEAEKQVQEFALQQNITTLRNRV
NELGVAEPVIQQQGANRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQGQAPFGAEIVASREGGKIAVKKD
VVLTGDSITDAAPGFDSTSAQAAVHINLDGKGARIFKDVTRENVGKRMAILLIEKGIAEAITAPVIREEIGGGRVQITGM
ETAQEASDVALLLRAGALAAPMQIVEERTVGPSMGAENIEKGFHSNIWGFLAVVAFMTIYYRVFGLFSSVALAINGFFLI
ALLSMLQATLTLPGMAAIALTLGMAIDANVLINERIREELRNGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGS
GPVRGFAVVLCLGILTSMFSAVTVSRAMVNLTYGRQPRLAKVSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=620, Percent_Identity=44.6774193548387, Blast_Score=511, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 64981; Mature: 64981

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYLLIGVTLVVAFLYTLPNFFGEVPAVQVSPVRTSETVDTALLGRVEALLKTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
SLPTSGVELAGNSIKARFASTDVQIKAKDVLQNGLGERYTVALNLVSASPAWLSTLNALP
CCCCCCHHHCCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHH
MYLGLDLRGGVHFLLEVDMKAALEKAAVRYQNDFRTELRGDKIRYSRISREGNAVVVRFA
HHCCEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEE
TRDQRDAAADKLAAVFTDLGFAAEDLDDGFLLTARLKPEAEKQVQEFALQQNITTLRNRV
CCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVIQQQGANRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQGQA
HHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEECCCC
PFGAEIVASREGGKIAVKKDVVLTGDSITDAAPGFDSTSAQAAVHINLDGKGARIFKDVT
CCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
RENVGKRMAILLIEKGIAEAITAPVIREEIGGGRVQITGMETAQEASDVALLLRAGALAA
HHHHCHHEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHH
PMQIVEERTVGPSMGAENIEKGFHSNIWGFLAVVAFMTIYYRVFGLFSSVALAINGFFLI
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLSMLQATLTLPGMAAIALTLGMAIDANVLINERIREELRNGATPQAAIHAGYDRAWGT
HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHH
ILDSNLTTLIAGIALFWLGSGPVRGFAVVLCLGILTSMFSAVTVSRAMVNLTYGRQPRLA
HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEE
KVSI
EECC
>Mature Secondary Structure
MNRYPLWKYLLIGVTLVVAFLYTLPNFFGEVPAVQVSPVRTSETVDTALLGRVEALLKTA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
SLPTSGVELAGNSIKARFASTDVQIKAKDVLQNGLGERYTVALNLVSASPAWLSTLNALP
CCCCCCHHHCCCCEEEEEECCCEEEEHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHH
MYLGLDLRGGVHFLLEVDMKAALEKAAVRYQNDFRTELRGDKIRYSRISREGNAVVVRFA
HHCCEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEE
TRDQRDAAADKLAAVFTDLGFAAEDLDDGFLLTARLKPEAEKQVQEFALQQNITTLRNRV
CCCCHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVIQQQGANRVVVQLPGVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQGQA
HHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCCEEEECCCC
PFGAEIVASREGGKIAVKKDVVLTGDSITDAAPGFDSTSAQAAVHINLDGKGARIFKDVT
CCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHH
RENVGKRMAILLIEKGIAEAITAPVIREEIGGGRVQITGMETAQEASDVALLLRAGALAA
HHHHCHHEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCHHH
PMQIVEERTVGPSMGAENIEKGFHSNIWGFLAVVAFMTIYYRVFGLFSSVALAINGFFLI
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLSMLQATLTLPGMAAIALTLGMAIDANVLINERIREELRNGATPQAAIHAGYDRAWGT
HHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHH
ILDSNLTTLIAGIALFWLGSGPVRGFAVVLCLGILTSMFSAVTVSRAMVNLTYGRQPRLA
HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEE
KVSI
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]