| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is yfiQ [H]
Identifier: 74318042
GI number: 74318042
Start: 2113479
End: 2116157
Strand: Reverse
Name: yfiQ [H]
Synonym: Tbd_2024
Alternate gene names: 74318042
Gene position: 2116157-2113479 (Counterclockwise)
Preceding gene: 74318044
Following gene: 74318032
Centisome position: 72.72
GC content: 67.82
Gene sequence:
>2679_bases ATGCCCCAGCATTATCTCGAACCTCTCTTCAACGCGAGCTCGGTCGCGGTCTTCGGCGCCAGCGAGCGTGAAGACTCGGT CGCCGGGACGCTGTTCCGCAACCTGCGCCACGCCGGCTACAAAGGCGAGGTCTATCCGATCAACCCTAAGCATGCGGAGA TTTTTGGCGAACGCTGCTATGCGCGGGCGAGCGAATTGCCCGCCACGCCAGAACTCGCGCTGATCGCAACGCCGGCCACC ACCGTGGCGGCGATACTCGAAGAATGCGGGCAGCGCGGCATCCGCCATGCGATCGTGCTGTCGGCCGGCTTCGCCGAGAC CGGCACGCAGGGGATTGAACTCGAGGCGGGCTTGCAGCGCGTCGCGAAGCAGCACGGAATTCGCTTCATCGGCCCGAACT GCCTCGGCATCCAGCGCCCGGCCATCGGCCTCAACGCGACCTTCAGCCAGGGCGCGACGCAGGCCGGCGACCTCGCGCTG GTCTCGCAGTCGGGCGCCTTGTGCACGGCGATGCTCGACTGGGCCGAAGCCAACGGCATCGGCTTTTCGAGCGTGGTGTC GACAGGCGCCTCGGCCGACCTCGATTTCGGCGAAATCCTCGATTACCTCGCCTACGACCGGCAGACCAAGGGCATTCTTC TGTACATCGAGGGCATACGCGACGCGCGCCGCTTCATGAGCGCGCTGCGCGCGACGTCCCGCTTCAAGCCCATCGTCATG GTCAAGGTCGGGCGGCACGAGGCCGGCTCGCGCGCCGTGCAGTCGCACACCGGCGCGCTCGTCGGCTCCGATGCCGTCTT CGACGCGCTCGTGCGGCGCGCCGGCGTCGTCCGCGTAAACACGATCCTGCAGCTCTTCGCCTCCGCGCGCGCGCTCGCGA CCCATATCCAGCCGTCCGGCAATCGCCTCGCGATCGTCACCAACGGCGGCGGGCCGGGCGTCATGGCGACCGACCTCGCC GTCGACGTCGGGCTACGCATGGCCGAGCTTTCGCCGGCGACGATCGCGGAACTCGACGCGGTGCTTCCGGCGACCTGGTC GCGCGGGAACCCGCTCGACATCATTGGCGACGCGACGGCGGAGCGCTACCGTGCAGCCGTCGGCGCCTGCCTGCACGACA ACAACGTCGACGGCGTGCTCGTGATGCTGACGCCTCAGGCGATGACCCGGCCGACTGCGGTCGCCGACGCGGTCATCGAC GTTGCCAAGCAGGCGCCCAAGCCCGTGCTGACCTGCTGGATGGGTGAAGCGCAGGTGCACGAGGGACGCCAGCGCTTCAA GCAGGCGGGCATTCCCTACTTCACCACGCCCGAGCCGGCGGTCGAGGTCTTTTCCTTCCTCGCGGCCTTCTACGAGAACC AGCGCCAGCTCATGCAGACGCCGGGGCCGCTTTCGCACCAGCTTGAGCCCGACGTCGAAGGCGCGCGCCTGATCATCGAG AGCGCACTCGCCCACGGCCGTCATCTGCTGAACGAGGTCGAATCGAAGGCGCTGCTGTCGGCCTTCCGCATTCCGATCGC GCAGACGCTGATCGCGCGCGACCCGATGGAGGCGATGCTGACCGCGCAGCAGATCGGTTTTCCGGTGGCGATGAAGATCA ATTCGCCCGACATCACCCACAAATCGGACGTCAATGGCGTGCGTCTCGGGCTCTCGAGTGGGCACGCGGTGCGCTCGGCC TTTGGCGAGATGCTCGCCGACGTCAAGCGGCTTCGGCCCGAGGCGCGGCTGGAGGGCATCGTGATCGAGCCGATGGTGAC GCGGCCGCACGCGCGTGAAGTCCTGCTCGGCATGACCTCGGATCCGGTGCTCGGCCCGGTGATCGTGTTCGGCGCCGGGG GCGTCGACGTCGAGGCCTTCCAGGACCGGGCGGTCACGCTGCCGCCGCTCAACACCTACCTCACGCGCGACCTCATCCGC CGTACCCGCGTCGCGACCCTGCTCGGAAGTTTTCGCAACCGCCCGCCGGTCGACATGGCGGCCCTCGAAAACGTGTTGTT GCGGCTCTCGGAAATGGTCTGCGAATTGCCCTGGCTCGCCGAGCTCGACATCAACCCCTTGCTGGTCGACGAGGGCGGCG CGCTCGCGCTCGACGCTCGCATCGTCATCGCGCCGCGCGTGCCCTCGGCCGATCGCTATGGCCACATGGCGATCCATCCG TATCCGGCGCATCTGGTCACGCACTGGCAGTTGCCGAGCGGCCACGACGTGCTGATCCGCCCGATCCGTCCGGAGGACGC GGAATTGACGCAGGGCTTCGTGCGCAGCCTGTCCGAGGAGAGCCGCTATTTCCGCTTCATGGACGCGGTGAGCGAGCTGT CGCCGGTGGCGCTCGCACGGCTCACCCAGATCGATTACACGCGCGAGATGGCGCTTCTGGCGCTCACCGAGATTGACGGT CGCGAGGTCGAGCTCGGCGTCGCGCGTTACGCCGTTAATGCGGACGGGACCTCGTGCGAGTTCGCGCTCGTCGTCAGCGA CGCCTGGCAAAAACAGGGCATCGGCCACAAGCTCATGGACGTGCTGATGGACGTCGCGCGCGGCCGCGGGCTGCGTCTCA TGGAAGGGGAGGTGCTGAAGGCCAACCGTCCGATGCTGAAGCTGGTGGGAAGCCTCGGCTTTCGCATCGAGCCTCACCCC GAGGACGAGGCGGTGCGCCGGGTTTCGCGTGCGCTCTGA
Upstream 100 bases:
>100_bases CGTTCTTCTCCACTATACGACAGGTGGCGCGGGCACAGGCGGTGGCCTAGGATGAGCTCACCGCGCCAAGCGCCGCCACG CCTCTTCGGACCGCCACGCC
Downstream 100 bases:
>100_bases GCGCGGCTACGGCGCTTCGACCGCGACCGGCCGGCGGCGCTGGGTGCAGACCTGGTTGCGGCCCGCTTCCTTGGCGGCAT AGAGCGCCTGATCCGCCGCG
Product: long-chain fatty-acid-CoA ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 892; Mature: 891
Protein sequence:
>892_residues MPQHYLEPLFNASSVAVFGASEREDSVAGTLFRNLRHAGYKGEVYPINPKHAEIFGERCYARASELPATPELALIATPAT TVAAILEECGQRGIRHAIVLSAGFAETGTQGIELEAGLQRVAKQHGIRFIGPNCLGIQRPAIGLNATFSQGATQAGDLAL VSQSGALCTAMLDWAEANGIGFSSVVSTGASADLDFGEILDYLAYDRQTKGILLYIEGIRDARRFMSALRATSRFKPIVM VKVGRHEAGSRAVQSHTGALVGSDAVFDALVRRAGVVRVNTILQLFASARALATHIQPSGNRLAIVTNGGGPGVMATDLA VDVGLRMAELSPATIAELDAVLPATWSRGNPLDIIGDATAERYRAAVGACLHDNNVDGVLVMLTPQAMTRPTAVADAVID VAKQAPKPVLTCWMGEAQVHEGRQRFKQAGIPYFTTPEPAVEVFSFLAAFYENQRQLMQTPGPLSHQLEPDVEGARLIIE SALAHGRHLLNEVESKALLSAFRIPIAQTLIARDPMEAMLTAQQIGFPVAMKINSPDITHKSDVNGVRLGLSSGHAVRSA FGEMLADVKRLRPEARLEGIVIEPMVTRPHAREVLLGMTSDPVLGPVIVFGAGGVDVEAFQDRAVTLPPLNTYLTRDLIR RTRVATLLGSFRNRPPVDMAALENVLLRLSEMVCELPWLAELDINPLLVDEGGALALDARIVIAPRVPSADRYGHMAIHP YPAHLVTHWQLPSGHDVLIRPIRPEDAELTQGFVRSLSEESRYFRFMDAVSELSPVALARLTQIDYTREMALLALTEIDG REVELGVARYAVNADGTSCEFALVVSDAWQKQGIGHKLMDVLMDVARGRGLRLMEGEVLKANRPMLKLVGSLGFRIEPHP EDEAVRRVSRAL
Sequences:
>Translated_892_residues MPQHYLEPLFNASSVAVFGASEREDSVAGTLFRNLRHAGYKGEVYPINPKHAEIFGERCYARASELPATPELALIATPAT TVAAILEECGQRGIRHAIVLSAGFAETGTQGIELEAGLQRVAKQHGIRFIGPNCLGIQRPAIGLNATFSQGATQAGDLAL VSQSGALCTAMLDWAEANGIGFSSVVSTGASADLDFGEILDYLAYDRQTKGILLYIEGIRDARRFMSALRATSRFKPIVM VKVGRHEAGSRAVQSHTGALVGSDAVFDALVRRAGVVRVNTILQLFASARALATHIQPSGNRLAIVTNGGGPGVMATDLA VDVGLRMAELSPATIAELDAVLPATWSRGNPLDIIGDATAERYRAAVGACLHDNNVDGVLVMLTPQAMTRPTAVADAVID VAKQAPKPVLTCWMGEAQVHEGRQRFKQAGIPYFTTPEPAVEVFSFLAAFYENQRQLMQTPGPLSHQLEPDVEGARLIIE SALAHGRHLLNEVESKALLSAFRIPIAQTLIARDPMEAMLTAQQIGFPVAMKINSPDITHKSDVNGVRLGLSSGHAVRSA FGEMLADVKRLRPEARLEGIVIEPMVTRPHAREVLLGMTSDPVLGPVIVFGAGGVDVEAFQDRAVTLPPLNTYLTRDLIR RTRVATLLGSFRNRPPVDMAALENVLLRLSEMVCELPWLAELDINPLLVDEGGALALDARIVIAPRVPSADRYGHMAIHP YPAHLVTHWQLPSGHDVLIRPIRPEDAELTQGFVRSLSEESRYFRFMDAVSELSPVALARLTQIDYTREMALLALTEIDG REVELGVARYAVNADGTSCEFALVVSDAWQKQGIGHKLMDVLMDVARGRGLRLMEGEVLKANRPMLKLVGSLGFRIEPHP EDEAVRRVSRAL >Mature_891_residues PQHYLEPLFNASSVAVFGASEREDSVAGTLFRNLRHAGYKGEVYPINPKHAEIFGERCYARASELPATPELALIATPATT VAAILEECGQRGIRHAIVLSAGFAETGTQGIELEAGLQRVAKQHGIRFIGPNCLGIQRPAIGLNATFSQGATQAGDLALV SQSGALCTAMLDWAEANGIGFSSVVSTGASADLDFGEILDYLAYDRQTKGILLYIEGIRDARRFMSALRATSRFKPIVMV KVGRHEAGSRAVQSHTGALVGSDAVFDALVRRAGVVRVNTILQLFASARALATHIQPSGNRLAIVTNGGGPGVMATDLAV DVGLRMAELSPATIAELDAVLPATWSRGNPLDIIGDATAERYRAAVGACLHDNNVDGVLVMLTPQAMTRPTAVADAVIDV AKQAPKPVLTCWMGEAQVHEGRQRFKQAGIPYFTTPEPAVEVFSFLAAFYENQRQLMQTPGPLSHQLEPDVEGARLIIES ALAHGRHLLNEVESKALLSAFRIPIAQTLIARDPMEAMLTAQQIGFPVAMKINSPDITHKSDVNGVRLGLSSGHAVRSAF GEMLADVKRLRPEARLEGIVIEPMVTRPHAREVLLGMTSDPVLGPVIVFGAGGVDVEAFQDRAVTLPPLNTYLTRDLIRR TRVATLLGSFRNRPPVDMAALENVLLRLSEMVCELPWLAELDINPLLVDEGGALALDARIVIAPRVPSADRYGHMAIHPY PAHLVTHWQLPSGHDVLIRPIRPEDAELTQGFVRSLSEESRYFRFMDAVSELSPVALARLTQIDYTREMALLALTEIDGR EVELGVARYAVNADGTSCEFALVVSDAWQKQGIGHKLMDVLMDVARGRGLRLMEGEVLKANRPMLKLVGSLGFRIEPHPE DEAVRRVSRAL
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=887, Percent_Identity=36.1894024802706, Blast_Score=550, Evalue=1e-157,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR011761 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR016102 [H]
Pfam domain/function: PF00583 Acetyltransf_1 [H]
EC number: NA
Molecular weight: Translated: 96496; Mature: 96365
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQHYLEPLFNASSVAVFGASEREDSVAGTLFRNLRHAGYKGEVYPINPKHAEIFGERCY CCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHH ARASELPATPELALIATPATTVAAILEECGQRGIRHAIVLSAGFAETGTQGIELEAGLQR HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEHHHHHHH VAKQHGIRFIGPNCLGIQRPAIGLNATFSQGATQAGDLALVSQSGALCTAMLDWAEANGI HHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHCCCC GFSSVVSTGASADLDFGEILDYLAYDRQTKGILLYIEGIRDARRFMSALRATSRFKPIVM CHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEE VKVGRHEAGSRAVQSHTGALVGSDAVFDALVRRAGVVRVNTILQLFASARALATHIQPSG EEECCCCCCHHHHHHHCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC NRLAIVTNGGGPGVMATDLAVDVGLRMAELSPATIAELDAVLPATWSRGNPLDIIGDATA CEEEEEECCCCCCCCHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCCCCCCCEEECCHHH ERYRAAVGACLHDNNVDGVLVMLTPQAMTRPTAVADAVIDVAKQAPKPVLTCWMGEAQVH HHHHHHHHHHEECCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH EGRQRFKQAGIPYFTTPEPAVEVFSFLAAFYENQRQLMQTPGPLSHQLEPDVEGARLIIE HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH SALAHGRHLLNEVESKALLSAFRIPIAQTLIARDPMEAMLTAQQIGFPVAMKINSPDITH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCC KSDVNGVRLGLSSGHAVRSAFGEMLADVKRLRPEARLEGIVIEPMVTRPHAREVLLGMTS CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCCHHHHHCCCCC DPVLGPVIVFGAGGVDVEAFQDRAVTLPPLNTYLTRDLIRRTRVATLLGSFRNRPPVDMA CCCCCCEEEEECCCCCHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ALENVLLRLSEMVCELPWLAELDINPLLVDEGGALALDARIVIAPRVPSADRYGHMAIHP HHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCEEECC YPAHLVTHWQLPSGHDVLIRPIRPEDAELTQGFVRSLSEESRYFRFMDAVSELSPVALAR CCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LTQIDYTREMALLALTEIDGREVELGVARYAVNADGTSCEFALVVSDAWQKQGIGHKLMD HHHHHHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEHHHHHCCCCHHHHH VLMDVARGRGLRLMEGEVLKANRPMLKLVGSLGFRIEPHPEDEAVRRVSRAL HHHHHHCCCCEEEECCCEECCCCHHHHHHHHCCCEECCCCCHHHHHHHHHCC >Mature Secondary Structure PQHYLEPLFNASSVAVFGASEREDSVAGTLFRNLRHAGYKGEVYPINPKHAEIFGERCY CCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHH ARASELPATPELALIATPATTVAAILEECGQRGIRHAIVLSAGFAETGTQGIELEAGLQR HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEHHHHHHH VAKQHGIRFIGPNCLGIQRPAIGLNATFSQGATQAGDLALVSQSGALCTAMLDWAEANGI HHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHCCCC GFSSVVSTGASADLDFGEILDYLAYDRQTKGILLYIEGIRDARRFMSALRATSRFKPIVM CHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCEEE VKVGRHEAGSRAVQSHTGALVGSDAVFDALVRRAGVVRVNTILQLFASARALATHIQPSG EEECCCCCCHHHHHHHCCCEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC NRLAIVTNGGGPGVMATDLAVDVGLRMAELSPATIAELDAVLPATWSRGNPLDIIGDATA CEEEEEECCCCCCCCHHHHHHHHCCCHHHCCCHHHHHHHHHCCCCCCCCCCCEEECCHHH ERYRAAVGACLHDNNVDGVLVMLTPQAMTRPTAVADAVIDVAKQAPKPVLTCWMGEAQVH HHHHHHHHHHEECCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHH EGRQRFKQAGIPYFTTPEPAVEVFSFLAAFYENQRQLMQTPGPLSHQLEPDVEGARLIIE HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH SALAHGRHLLNEVESKALLSAFRIPIAQTLIARDPMEAMLTAQQIGFPVAMKINSPDITH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCC KSDVNGVRLGLSSGHAVRSAFGEMLADVKRLRPEARLEGIVIEPMVTRPHAREVLLGMTS CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHCCEEEECCCCCCCHHHHHCCCCC DPVLGPVIVFGAGGVDVEAFQDRAVTLPPLNTYLTRDLIRRTRVATLLGSFRNRPPVDMA CCCCCCEEEEECCCCCHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH ALENVLLRLSEMVCELPWLAELDINPLLVDEGGALALDARIVIAPRVPSADRYGHMAIHP HHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEEEEEECCCCCCCCCCCEEECC YPAHLVTHWQLPSGHDVLIRPIRPEDAELTQGFVRSLSEESRYFRFMDAVSELSPVALAR CCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH LTQIDYTREMALLALTEIDGREVELGVARYAVNADGTSCEFALVVSDAWQKQGIGHKLMD HHHHHHHHHHHHHEEECCCCCEEEEEEEEEEECCCCCCEEEEEEEEHHHHHCCCCHHHHH VLMDVARGRGLRLMEGEVLKANRPMLKLVGSLGFRIEPHPEDEAVRRVSRAL HHHHHHCCCCEEEECCCEECCCCHHHHHHHHCCCEECCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]