Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74317952

Identifier: 74317952

GI number: 74317952

Start: 2029676

End: 2030140

Strand: Direct

Name: 74317952

Synonym: Tbd_1934

Alternate gene names: NA

Gene position: 2029676-2030140 (Clockwise)

Preceding gene: 74317951

Following gene: 74317955

Centisome position: 69.75

GC content: 66.88

Gene sequence:

>465_bases
GTGGAATACATCGTCGTCAAGTGGCTGCACATCCTGTCGTCGACCTTCCTGTTCGGCACCGGCATCGGCTCGGCCTTCTA
TCTCTTTTTTGCGAGCCTCAAGCGCGAGCCGCTCGCCGTCGCCTTTGTCGCCCGCCACGTCGTCAAGGCCGACTGGCTGT
TCACCGCGACGACCGTCGTGTTCCAGCCGGCGAGCGGCTTCTATCTGGCCTACCTTGCGGACATCCCGCTCGGCAGCATG
TGGATCGCGGGGTCGACCGCGCTCTACCTCTTTGCGGTCGGCTGCTGGCTCCCGGTCGCGCGCCTGCAGTACCGCATGCG
CGACGCCGCGCGGCGGGCGGTCCAAGACGGCGCTGACCTGCCGCCGGACTACTGGCGCGCCTTCCGCATGTGGATCGCGC
TGGGCTTCCCGGCGCTGTTCGCGTTCGTCGCGATCTTCTACCTCATGGTCGCGAAGCCCGTGTGA

Upstream 100 bases:

>100_bases
ACCTGCCCGAATTCTGGGCCCACCCCTACGGCCCGATCCTCAAGAACCTGCCGCTGCTCGCGGCGATCTGGGTGCTCTAT
GCGCTCGAGAAGGACTGAAC

Downstream 100 bases:

>100_bases
ACGTCCGACCCGTGCAAGACGCGGGAAAAATCTGCACGGAGATTTGCACGGCTTACGCGAAGGCGTACCCGAGCCTGCGC
ACGTCGTGCGGGTCCTCAGG

Product: integral membrane protein

Products: NA

Alternate protein names: Integral Membrane Protein-Like Protein; Transmembrane Protein; Integral Membrane Protein-Like; Integral Membrane-Like Protein; Exonuclease VII Large Subunit

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MEYIVVKWLHILSSTFLFGTGIGSAFYLFFASLKREPLAVAFVARHVVKADWLFTATTVVFQPASGFYLAYLADIPLGSM
WIAGSTALYLFAVGCWLPVARLQYRMRDAARRAVQDGADLPPDYWRAFRMWIALGFPALFAFVAIFYLMVAKPV

Sequences:

>Translated_154_residues
MEYIVVKWLHILSSTFLFGTGIGSAFYLFFASLKREPLAVAFVARHVVKADWLFTATTVVFQPASGFYLAYLADIPLGSM
WIAGSTALYLFAVGCWLPVARLQYRMRDAARRAVQDGADLPPDYWRAFRMWIALGFPALFAFVAIFYLMVAKPV
>Mature_154_residues
MEYIVVKWLHILSSTFLFGTGIGSAFYLFFASLKREPLAVAFVARHVVKADWLFTATTVVFQPASGFYLAYLADIPLGSM
WIAGSTALYLFAVGCWLPVARLQYRMRDAARRAVQDGADLPPDYWRAFRMWIALGFPALFAFVAIFYLMVAKPV

Specific function: Unknown

COG id: COG5528

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17363; Mature: 17363

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYIVVKWLHILSSTFLFGTGIGSAFYLFFASLKREPLAVAFVARHVVKADWLFTATTVV
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHE
FQPASGFYLAYLADIPLGSMWIAGSTALYLFAVGCWLPVARLQYRMRDAARRAVQDGADL
ECCCCCCEEEHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PPDYWRAFRMWIALGFPALFAFVAIFYLMVAKPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEYIVVKWLHILSSTFLFGTGIGSAFYLFFASLKREPLAVAFVARHVVKADWLFTATTVV
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHE
FQPASGFYLAYLADIPLGSMWIAGSTALYLFAVGCWLPVARLQYRMRDAARRAVQDGADL
ECCCCCCEEEHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PPDYWRAFRMWIALGFPALFAFVAIFYLMVAKPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA