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The map label for this gene is rci [H]

Identifier: 74317826

GI number: 74317826

Start: 1911396

End: 1912454

Strand: Direct

Name: rci [H]

Synonym: Tbd_1808

Alternate gene names: 74317826

Gene position: 1911396-1912454 (Clockwise)

Preceding gene: 74317825

Following gene: 74317827

Centisome position: 65.69

GC content: 60.91

Gene sequence:

>1059_bases
ATGGCAACAATCCGTAAAAGAGGCGAATTGCAGTGGCAGGCCATCGTCAAACGGAAAGGCTACCCTCTGCAATCCAAAAC
CTGGAACACTCGCAAAGAGGCCGAAGCTTGGGCGCGGCAGATTGAAAGCGAGATGGATCGCGGTGTCTTCGTCAGCCGCG
CCGAGGTGGAGCGGACGACGCTGCAGGATCTGATCGGGCGGTATCGCATCGAAGTGCTGCCAAACAAGCGTGGCAAGCAC
TTCGGCCCGGCCCTGAGGGTGCTGGAACAGCACCTGGGGAAATATTCGCTCGCCGCGCTGTCGCCGAAGCTCATCGCCGG
CTTCCGTGACAAGAGAACGAAAGCCGGTCTGTCAGCATCGACGGTCAAGAAAGAAATCAATCTGCTCTCGAAGTTGATCG
ACCTGGCCGGTAAAGAATGGGGGGTCGCGTTGCCCGCGAACCCCTGCGCGATGGTCTCCAGGCCGGTCGAGAAAAACGCC
AGGGACCGCCGCCTGCAGCCGGAGGAAGAAAAGTATCTGCTGACCGCTTGCGAACAGCACGTCGCGCTCCTCTCCCGCTT
TGCGCTTGAGACCGCCGCGCGCTTGGGCGAGCTGCTTGCGCTACGCTGGGCAGACGTTGACACGACGAAGCGGGTGATGG
TGATTCGGGGCATAGACGAGCGCGGCACAAAGTCGGGCGATGCGCTCCGTGCTGTCCCTTTGTCGCCTGCCGCGGTTTCC
GTGCTGGATGAACTGAAGAAGCTACCGCGAGGGATCGACGGCCGAGTGTTTTACTGGTGGAAAGCGTCCGACAGTTTTAG
CAAGACGTGGGGGCGCGCATTGACGCGGGCGCACGCCTCGTACATCGCCGACTGCGAGAAGGCCGGGGGGGAGCCGGACC
AAGCATTTCTGATAGACCTGAGGTTCCACGATCTACGCCATGAGGCAACGTCACGCCTGTTCGAAAAAGGCGTGTTCGAC
AGCATGGAGGTCGCCAGCATCACGGGGCACAAGACCCTCGCCATGCTCAAGCGGTATACGCACCTGCGGGCTGAAGATTT
GGCGAAGAAGCTGGGCTAG

Upstream 100 bases:

>100_bases
TTACAAGGCGAATTGTATAACCCGTGAAAGCCTTGAATTTGTTCGACTACAGCAAATTCGATAGAATTGTTGTCACCCGC
TCGTCACCCGCGATTTTTAA

Downstream 100 bases:

>100_bases
TGCTTTTCCCCCGCGATTGGGACTGTCTCTTTATGGCAAAGCCGCTTTAAGGATTTTGGATGCACAATTGCCGTTTTGGA
TACACAATTGTGCGCTCTCA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MATIRKRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVFVSRAEVERTTLQDLIGRYRIEVLPNKRGKH
FGPALRVLEQHLGKYSLAALSPKLIAGFRDKRTKAGLSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNA
RDRRLQPEEEKYLLTACEQHVALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDALRAVPLSPAAVS
VLDELKKLPRGIDGRVFYWWKASDSFSKTWGRALTRAHASYIADCEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFD
SMEVASITGHKTLAMLKRYTHLRAEDLAKKLG

Sequences:

>Translated_352_residues
MATIRKRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVFVSRAEVERTTLQDLIGRYRIEVLPNKRGKH
FGPALRVLEQHLGKYSLAALSPKLIAGFRDKRTKAGLSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNA
RDRRLQPEEEKYLLTACEQHVALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDALRAVPLSPAAVS
VLDELKKLPRGIDGRVFYWWKASDSFSKTWGRALTRAHASYIADCEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFD
SMEVASITGHKTLAMLKRYTHLRAEDLAKKLG
>Mature_351_residues
ATIRKRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVFVSRAEVERTTLQDLIGRYRIEVLPNKRGKHF
GPALRVLEQHLGKYSLAALSPKLIAGFRDKRTKAGLSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNAR
DRRLQPEEEKYLLTACEQHVALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDALRAVPLSPAAVSV
LDELKKLPRGIDGRVFYWWKASDSFSKTWGRALTRAHASYIADCEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFDS
MEVASITGHKTLAMLKRYTHLRAEDLAKKLG

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=238, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39697; Mature: 39566

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIRKRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVFVSRAEVERTT
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHH
LQDLIGRYRIEVLPNKRGKHFGPALRVLEQHLGKYSLAALSPKLIAGFRDKRTKAGLSAS
HHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCHHH
TVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNARDRRLQPEEEKYLLTACEQH
HHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHCCCHHCCHHHCCCCCHHHHHHHHHHHHH
VALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDALRAVPLSPAAVS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHH
VLDELKKLPRGIDGRVFYWWKASDSFSKTWGRALTRAHASYIADCEKAGGEPDQAFLIDL
HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
RFHDLRHEATSRLFEKGVFDSMEVASITGHKTLAMLKRYTHLRAEDLAKKLG
HHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATIRKRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVFVSRAEVERTT
CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHH
LQDLIGRYRIEVLPNKRGKHFGPALRVLEQHLGKYSLAALSPKLIAGFRDKRTKAGLSAS
HHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCHHH
TVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNARDRRLQPEEEKYLLTACEQH
HHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHCCCHHCCHHHCCCCCHHHHHHHHHHHHH
VALLSRFALETAARLGELLALRWADVDTTKRVMVIRGIDERGTKSGDALRAVPLSPAAVS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEECCCCHHHHH
VLDELKKLPRGIDGRVFYWWKASDSFSKTWGRALTRAHASYIADCEKAGGEPDQAFLIDL
HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
RFHDLRHEATSRLFEKGVFDSMEVASITGHKTLAMLKRYTHLRAEDLAKKLG
HHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]