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The map label for this gene is cheD

Identifier: 74317634

GI number: 74317634

Start: 1698122

End: 1698730

Strand: Reverse

Name: cheD

Synonym: Tbd_1616

Alternate gene names: 74317634

Gene position: 1698730-1698122 (Counterclockwise)

Preceding gene: 74317635

Following gene: 74317633

Centisome position: 58.38

GC content: 61.9

Gene sequence:

>609_bases
ATGAACTCGGCGATCGAGGAGCAGCTGGCGACCAACCTGTACTACGACCGCAATTTCGACTGCGAGACGGCCAAGATATT
GCCGGGCGAGTACTACTTCACGGCCAAGCCCATGCTCATCGTCACGGTGCTCGGCTCCTGCGTCGCGGCCTGCATCCGAG
ACCGCGTCTCCGGCATCGGCGGCATGAATCATTTCATGCTGCCCGACGGCGGCGGCGATCCGGGCAACCCGCTTTCGGCA
TCGATGCGCTATGGCGCCTACGCGATGGAGGTGCTGATCAACCAGCTGCTCAAGGCCGGCGCACGCCGCGAAAATCTCGA
GGCCAAGGTATTCGGCGGCGGCAACGTGCTGCGCGGTTTCACGACCATGAACGTCGGCGAGCGTAATGCCCAGTTCGTGC
GCGATTTCCTGCGCGCCGAGAACATCCGCGTCGTGGCGGAAGACCTCAACGACGTGCATCCGCGCAAGGTCTATTTCTTC
CCCCGGACCGGCAGGGTGCTGGTCAAGAAGCTGAAACAACTCAACAACTACACGCTGGTGAAACGCGAACAGGATTACGC
GAGCCGCCTCAAGAGCAACGTCGTCGCGGGCGAGGTCGATCTGTTCTGA

Upstream 100 bases:

>100_bases
GCCATTCCGAGAACTTTCTCTACGCCTGCGACGCGTTCAAGCTTCGCGGCAAGACCGTCTACGAACTCGACCCGCGCCAT
CGCCGTACAGGGACGCCTGC

Downstream 100 bases:

>100_bases
CCGACCGCGGCTGTGCAGGAACGAAAAATGAAAATCAAGGTACTGATCGTCGACGACTCCGCGCTGATCCGCGGGGTGAT
GCGCGAAATTATCAACAGTC

Product: chemoreceptor glutamine deamidase CheD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNSAIEEQLATNLYYDRNFDCETAKILPGEYYFTAKPMLIVTVLGSCVAACIRDRVSGIGGMNHFMLPDGGGDPGNPLSA
SMRYGAYAMEVLINQLLKAGARRENLEAKVFGGGNVLRGFTTMNVGERNAQFVRDFLRAENIRVVAEDLNDVHPRKVYFF
PRTGRVLVKKLKQLNNYTLVKREQDYASRLKSNVVAGEVDLF

Sequences:

>Translated_202_residues
MNSAIEEQLATNLYYDRNFDCETAKILPGEYYFTAKPMLIVTVLGSCVAACIRDRVSGIGGMNHFMLPDGGGDPGNPLSA
SMRYGAYAMEVLINQLLKAGARRENLEAKVFGGGNVLRGFTTMNVGERNAQFVRDFLRAENIRVVAEDLNDVHPRKVYFF
PRTGRVLVKKLKQLNNYTLVKREQDYASRLKSNVVAGEVDLF
>Mature_202_residues
MNSAIEEQLATNLYYDRNFDCETAKILPGEYYFTAKPMLIVTVLGSCVAACIRDRVSGIGGMNHFMLPDGGGDPGNPLSA
SMRYGAYAMEVLINQLLKAGARRENLEAKVFGGGNVLRGFTTMNVGERNAQFVRDFLRAENIRVVAEDLNDVHPRKVYFF
PRTGRVLVKKLKQLNNYTLVKREQDYASRLKSNVVAGEVDLF

Specific function: Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis

COG id: COG1871

COG function: function code NT; Chemotaxis protein; stimulates methylation of MCP proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CheD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CHED_THIDA (Q3SIF9)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_315374.1
- HSSP:   Q9X005
- ProteinModelPortal:   Q3SIF9
- SMR:   Q3SIF9
- STRING:   Q3SIF9
- GeneID:   3673001
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_1616
- NMPDR:   fig|292415.3.peg.1616
- eggNOG:   COG1871
- HOGENOM:   HBG531149
- OMA:   PRKVYFF
- ProtClustDB:   PRK13487
- BioCyc:   TDEN292415:TBD_1616-MONOMER
- GO:   GO:0006935
- HAMAP:   MF_01440
- InterPro:   IPR005659

Pfam domain/function: PF03975 CheD

EC number: =3.5.1.44

Molecular weight: Translated: 22566; Mature: 22566

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSAIEEQLATNLYYDRNFDCETAKILPGEYYFTAKPMLIVTVLGSCVAACIRDRVSGIG
CCHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
GMNHFMLPDGGGDPGNPLSASMRYGAYAMEVLINQLLKAGARRENLEAKVFGGGNVLRGF
CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECE
TTMNVGERNAQFVRDFLRAENIRVVAEDLNDVHPRKVYFFPRTGRVLVKKLKQLNNYTLV
EECCCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEE
KREQDYASRLKSNVVAGEVDLF
EECHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MNSAIEEQLATNLYYDRNFDCETAKILPGEYYFTAKPMLIVTVLGSCVAACIRDRVSGIG
CCHHHHHHHHHHHCCCCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCC
GMNHFMLPDGGGDPGNPLSASMRYGAYAMEVLINQLLKAGARRENLEAKVFGGGNVLRGF
CCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECE
TTMNVGERNAQFVRDFLRAENIRVVAEDLNDVHPRKVYFFPRTGRVLVKKLKQLNNYTLV
EECCCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEE
KREQDYASRLKSNVVAGEVDLF
EECHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA